BAC Information

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BAC

Clone NameMSMg01-052J04
Chromosome14 (Build37)
Map Location 98,308,889 - 98,438,650
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052J04.T7 (MSMg01no052_j04.b1)MSMg01-052J04.TJ (MSMg01no052_j04.g1)
ACCAG281025AG281026
length689690
length of high quality
(start - end)		592 (42 - 633)546 (73 - 618)
definitionCHROMAT_FILE: MSMg01no052_j04.b1 PHD_FILE: MSMg01no052_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:14 2005CHROMAT_FILE: MSMg01no052_j04.g1 PHD_FILE: MSMg01no052_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,308,889 - 98,309,477)(98,438,105 - 98,438,650)
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAATT
CAAAACGATTACACTCATATTGTCACATCCATGACTGAATATTTGCAAAA
CTGCACTGTCCTTGCTACCTGCTCTTCACCAGGAACCAGCGTTACATTCC
ATGATAAAGCATCAATAATCACAACTACTTATTTATAAAGAAGATTATTT
CACTTAGCTTTAATTAATCATGATTTCTTTTTAATTTCCTTCAAACCCCT
ATAAAACTCTTCATCTTTATTTTACTTAGAATTTTTCTCACTGGAAATGA
CATAGAAGTAGATAAGCCACTCTTTCTAACTTTAAATGACTTATCTTTCT
ACAACTTCTGAATTGCACATTGACAGAGTTGACCACTGCTTTTCCTTAGT
ACATAATCCATATTCCACACTCCTGATTTTGCTCACACTTTCATTGTTTC
ATTCAGGGAATATTTACTGAATATTACCTCCTGTCATGCAGGATATAAAG
TTATGATTATTATTACGGTTTTTAATGACTTTTTTTTTCATCATGGACCT
TATCTCATTCACTGTAGACTTAGCAAGGTACATCATCATTTTCACTGATA
AATTCAAATTCCCATGCTCTGAAAGCTGTGTTAAGAAAAAAAATTGTAGG
CTGGGGGTGGTGGCCTAGACCTTTAATCCCAGCCACTTG

GATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATGTTTCAATATTCTAATAGTAAGAG
AATGGTGAATACTTTTTGGATAATTGTATATTTCTCACTTTCTCACATTT
TGAGTCTAATATTAATTTCCTTTCTCTTGTGAGACTATTGAATCCTGGAG
AAGAGATTTGTAGAATAAATATTCTGCAGCTAAATGTTTTGTGTTCTTGA
ACAGAAAGTATATATGAATTGTTATATTAATAGGATAAAGCTTATAGAAT
AGTTCATACTATTATGGTAATGGAGGGAAATTAATAAGCAATGTGGAACT
GGAAAGATTAGTGGAGAAGCTGAGGAGAACAAGTGTAGGCTTAACATAGA
CAATTGAAGGAAGTGGCATTCTACACTGAAGGACAAATGTACACACAGCT
TGGACATATGGAAGCCGTTAGGCACCAACTATAAACCAGGGTGAGAATGA
TAGGAAAACTTTGCCTGAAAGGAGCTGAAGCATTTAATTTAGAGAGCTTT
GAATCCTGTGATAAGAACCCTGAAAAACTTTCAGAAAGCACTGGTGGTGT
TATAATGTTCACTCTGTAATTGTCAGTTATGCCATAATCCAAAACTGCAG
GGACTCAAAGCTAAGGACCTGAGATAAGGCTGCATTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_j04.b1 MSMg01no052_j04.b1 CHROMAT_FILE:
MSMg01no052_j04.b1 PHD_FILE: MSMg01no052_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:14 2005
         (592 letters)



>mm_chr14_98308686_98309677
          Length = 992

 Score = 1123 bits (581), Expect = 0.0
 Identities = 587/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaaacgattacactcatattgtcacatccatgactgaatatttgcaaaactgc 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaacgaccacactcatattgtcacatccatgactgaatatttgcaaaactgc 263

                                                                       
Query: 64  actgtccttgctacctgctcttcaccaggaaccagcgttacattccatgataaagcatca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actgtccttgctacctgctcttcaccaggaaccagcgttacattccatgataaagcatca 323

                                                                       
Query: 124 ataatcacaactacttatttataaagaagattatttcacttagctttaattaatcatgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ataatcacaactacttatttataaagaagattatttcacttagctttaattaatcatgat 383

                                                                       
Query: 184 ttctttttaatttccttcaaacccctataaaactcttcatctttattttacttagaattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctttttaatttccttcaaacccctataaaactcttcatctttattttacttagaattt 443

                                                                       
Query: 244 ttctcactggaaatgacatagaagtagataagccactctttctaactttaaatgacttat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctcactggaaatgacatagaagtagataagccactctttctaactttaaatgacttat 503

                                                                       
Query: 304 ctttctacaacttctgaattgcacattgacagagttgaccactgcttttccttagtacat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttctacaacttctgaattgcacattgacagagttgaccactgcttttccttagtacat 563

                                                                       
Query: 364 aatccatattccacactcctgattttgctcacactttcattgtttcattcagggaatatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatccatattccacactcctgattttgctcacactttcattgtttcattcagggaatatt 623

                                                                       
Query: 424 tactgaatattacctcctgtcatgcaggatataaagttatgattattattacggttttta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tactgaatattacctcctgtcatgcaggatataaagttatgattattattacggttttta 683

                                                                       
Query: 484 atgactttttttttcatcatggaccttatctcattcactgtagacttagcaaggtacatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgactttttttttcatcatggaccttatctcattcactgtagacttagcaaggtacatc 743

                                                            
Query: 544 atcattttcactgataaattcaaattcccatgctctgaaagctgtgtta 592
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atcattttcactgataaattcaaattcccatgctctgaaagctgtgtta 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no052_j04.g1 MSMg01no052_j04.g1 CHROMAT_FILE:
MSMg01no052_j04.g1 PHD_FILE: MSMg01no052_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:14 2005
         (546 letters)



>mm_chr14_98437905_98438850
          Length = 946

 Score = 1056 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgtttcaatattctaatagtaagagaatggtgaatactttttggataattgtatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctatgtttcaatattctaatagtaagagaatggtgaatactttttggataattgtatatt 687

                                                                       
Query: 61  tctcactttctcacattttgagtctaatattaatttcctttctcttgtgagactattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tctcactttctcacattttgagtctaatattaatttcctttctcttgtgagactattgaa 627

                                                                       
Query: 121 tcctggagaagagatttgtagaataaatattctgcagctaaatgttttgtgttcttgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcctggagaagagatttgtagaataaatattctgcagctaaatgttttgtgttcttgaac 567

                                                                       
Query: 181 agaaagtatatatgaattgttatattaataggataaagcttatagaatagttcatactat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agaaagtatatatgaattgttatattaataggataaagcttatagaatagttcatactat 507

                                                                       
Query: 241 tatggtaatggagggaaattaataagcaatgtggaactggaaagattagtggagaagctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tatggtaatggagggaaattaataagcaatgtggaactggaaagattagtggagaagctg 447

                                                                       
Query: 301 aggagaacaagtgtaggcttaacatagacaattgaaggaagtggcattctacactgaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aggagaacaagtgtaggcttaacatagacaattgaaggaagtggcattctacactgaagg 387

                                                                       
Query: 361 acaaatgtacacacagcttggacatatggaagccgttaggcaccaactataaaccagggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acaaatgtacacacagcttggacatatggaagccgttaggcaccaactataaaccagggt 327

                                                                       
Query: 421 gagaatgataggaaaactttgcctgaaaggagctgaagcatttaatttagagagctttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gagaatgataggaaaactttgcctgaaaggagctgaagcatttaatttagagagctttga 267

                                                                       
Query: 481 atcctgtgataagaaccctgaaaaactttcagaaagcactggtggtgttataatgttcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atcctgtgataagaaccctgaaaaactttcagaaagcactggtggtgttataatgttcac 207

                 
Query: 541 tctgta 546
           ||||||
Sbjct: 206 tctgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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