BAC Information

Click to search

BAC

Clone NameMSMg01-052P10
Chromosome14 (Build37)
Map Location 95,425,723 - 95,426,283
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043356, LOC100043783
Downstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052P10.T7 (MSMg01no052_p10.b1)MSMg01-052P10.TJ (MSMg01no052_p10.g1)
ACCAG281313AG281314
length694698
length of high quality
(start - end)
560 (62 - 621)297 (67 - 363)
definitionCHROMAT_FILE: MSMg01no052_p10.b1 PHD_FILE: MSMg01no052_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:44 2005CHROMAT_FILE: MSMg01no052_p10.g1 PHD_FILE: MSMg01no052_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATCATA
TGCTTTCCATCATATTTTGTCTACAAATGCTCTTTTCTTGAAATAATCAG
CCACCTCTGCCTCTTAAAATCATCTATATGTTCTTTCTCATAGAGCTTTG
AGGAGAGGGGTCTGATAAATACAACCAATTTTTGGATTGAGCATTCAAAC
CCTTTCTCTGAACATCAGCCAGTTGTGGCTTTCTATATTAATTACATTCT
ACTTCAAGATGACACTTCATTCAAGAGTGAAAAAGTTTCAAGTCAAATAC
AACAGTGTCTGAATGTTGAGATTTGCTATATTGACAGTAATTAGTCATAA
TTAATATAATTAAGCAAATAATAATTAATGTTATTGCATCAGTAACATCA
ATAAAAGTTAATAAATATTATTATTATTAATAATTTGCACATGTTTTCAC
TTCACACTAGAGTGAAACGGACAATATCCATTAGGTACTAGAATAAATAT
AAACTCAGATTCTCTCAGGCTTATCAACCTACAATGTTAATTTTTTATAT
GAACTCAAATTAGGTCAAATATATCACAATAGAGATAAATATTCAATATC
ATGTTGTTTCTATTTTCAGTTTTTTCTCTTCATTTTTACAGGTCCCACCT
CTGCCTAAAACAAGAAAACTTACTATACTAAGGAGACGGCACTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCGGAGGAATATCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAACTCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATGAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCA
GTTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTAGAAATCAGTCTGG
CGGTTCCTCTTATTATTGGACATAATACTACCAGAGAATCCAGCAATACC
TCTCCTGGGCATATATACAGAAGATGTTCCATCTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCATATGCCCCTCAACAAAGGAATGGATACAGAATATGTGGTACAT
TTACACCACGGAGTACTAATCAGCTATTAAAAGGAATGAATTTATGAATT
TCCTAGGCCAATGGATGGACCTGGATGGCATCTTCCTGAGTGAGGTAACA
TAATCACAAAGAAACTCACACAATAATGTACTCACTGATTAGTGCATATT
AGACCACTAACTTATAATACCCAATATTTACGATACTCATTGTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_p10.b1 MSMg01no052_p10.b1 CHROMAT_FILE:
MSMg01no052_p10.b1 PHD_FILE: MSMg01no052_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:44 2005
         (560 letters)



>mm_chr14_95425538_95426497
          Length = 960

 Score = 1069 bits (553), Expect = 0.0
 Identities = 559/561 (99%), Gaps = 1/561 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattttgtctac-aaatgctcttttcttgaaataatcagccacctctgcctcttaaaat 59
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 atattttgtctacaaaatgctcttttcttgaaataatcagccacctctgcctcttaaaat 687

                                                                       
Query: 60  catctatatgttctttctcatagagctttgaggagaggggtctgataaatacaaccaatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 catctatatgttctttctcatagagctttgaggagaggggtctgataaatacaaccaatt 627

                                                                       
Query: 120 tttggattgagcattcaaaccctttctctgaacatcagccagttgtggctttctatatta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttggattgagcattcaaaccctttctctgaacatcagccagttgtggctttctatatta 567

                                                                       
Query: 180 attacattctacttcaagatgacacttcattcaagagtgaaaaagtttcaagtcaaatac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attacattctacttcaagatgacacttcattcaagagtgaaaaagtttcaagtcaaatac 507

                                                                       
Query: 240 aacagtgtctgaatgttgagatttgctatattgacagtaattagtcataattaatataat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aacagtgtctgaatgttgagatttgctatattgacagtaattagtcataattaatataat 447

                                                                       
Query: 300 taagcaaataataattaatgttattgcatcagtaacatcaataaaagttaataaatatta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taagcaaataataattaatgttattgcatcagtaacatcaataaaagttaataaatatta 387

                                                                       
Query: 360 ttattattaataatttgcacatgttttcacttcacactagagtgaaacggacaatatcca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttattattaataatttgcacatgttttcacttcacactagagtgaaacggacaatatcca 327

                                                                       
Query: 420 ttaggtactagaataaatataaactcagattctctcaggcttatcaacctacaatgttaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttaggtactagaataaatataaactcagattctctcaggcttatcaacctacaatgttaa 267

                                                                       
Query: 480 ttttttatatgaactcaaattaggtcaaatatatcacaatagagataaatattcaatatc 539
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 266 ttttttatatgaactcaaattaggtcaaatatatcaaaatagagataaatattcaatatc 207

                                
Query: 540 atgttgtttctattttcagtt 560
           |||||||||||||||||||||
Sbjct: 206 atgttgtttctattttcagtt 186


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)