Query= MSMg01no053_h21.b1 MSMg01no053_h21.b1 CHROMAT_FILE:
MSMg01no053_h21.b1 PHD_FILE: MSMg01no053_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:25 2005
(275 letters)
>mm_chr14_15598182_15598856
Length = 675
Score = 509 bits (263), Expect = e-149
Identities = 272/275 (98%)
Strand = Plus / Minus
Query: 1 gtccatgatacccaacagcctaagccacagatactaaccctgcaacttgatggctttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtccatgatacccaacagcctaagccacagatactaaccctgcaacttgatggctttgag 416
Query: 61 tccttggctttcaaaatgtacttcaccgtaaacttcctcttgtaagacctacatttagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tccttggctttcaaaatgtacttcaccgtaaacttcctcttgtaagacctacatttagcc 356
Query: 121 taacaaatagttcagataaacatcttacaggtttaattttgctagcactaagaggtttta 180
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct: 355 taacaaatagttcagataaacatcttacaggtttaattttactaacactaagagttttta 296
Query: 181 ttgttcctcaaatgatttgctttgtcattactccagtccattagattagcattgatggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttgttcctcaaatgatttgctttgtcattactccagtccattagattagcattgatggcc 236
Query: 241 aatgttatttttcttcatctctacattactggggt 275
|||||||||||||||||||||||||||||||||||
Sbjct: 235 aatgttatttttcttcatctctacattactggggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no053_h21.g1 MSMg01no053_h21.g1 CHROMAT_FILE:
MSMg01no053_h21.g1 PHD_FILE: MSMg01no053_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:25 2005
(547 letters)
>mm_chr10_54563019_54563965
Length = 947
Score = 946 bits (489), Expect = 0.0
Identities = 532/547 (97%), Gaps = 2/547 (0%)
Strand = Plus / Minus
Query: 1 agacattgtaatctggagtctgacctgtaagctttgcattatgcttcctgagaaagtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agacattgtaatctggagtctgacctgtaagctttgcattatgcttcctgagaaagtgaa 521
Query: 61 atcctatgattttgaaaaaagtttccatcaattatggtagttctttaagggaagagtgat 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 520 atcctatgattttgaaaaaagtttccatcaattatggtaattctttaagggaagagtgat 461
Query: 121 catttcattgtgcactatattttgaaatgctatcattggtcttcaaggagtttattaaag 180
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 460 catttcattgtggactatattttgaaatgctatcattggtcttcaaggagcttattaaag 401
Query: 181 aaaatggtttaaatgactttaaatatttgtccacttcggctgaattttctttgtttggct 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 400 aaaatggtttaaatgactttaaatatttgtccactttggctgaattttctttgtttggct 341
Query: 241 gaattttctttgatcaattgaaaagaaaaccaaatcagcagtccctatttgttagtggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaattttctttgatcaattgaaaagaaaaccaaatcagcagtccctatttgttagtggct 281
Query: 301 ttgtctttgaactcatagaaagataaagggtaatagcgctgttgcagaaacactggtgta 360
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 280 ttgtctttgaactcatagaaagataaagggtgatagcgatgttgcagaaacactggtgta 221
Query: 361 acctcgtatctcttatgtctttcctttttcttattagatattttctttatttatatttca 420
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 acctcccatctcttatgtctttcctttttcttattagatattttctttatttatattt-- 163
Query: 421 catgttatcccttttcctagtttcccctctgaaaacccccaatcccattccccctctccc 480
|||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 162 catgttattctttttcctagtttcccctctgaaaacctccaatcccattccccctctccc 103
Query: 481 tgcttctgtgagggtgttcctccacccacccacccactccccacttccctggactggtat 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 102 tgcttctgtgagggtgttcctccacccacccacccactccccacttccctggcctggcat 43
Query: 541 ttcccta 547
|||||||
Sbjct: 42 ttcccta 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
