Query= MSMg01no053_m05.b1 MSMg01no053_m05.b1 CHROMAT_FILE:
MSMg01no053_m05.b1 PHD_FILE: MSMg01no053_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:46 2005
(246 letters)
>mm_chr14_23553826_23554471
Length = 646
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%)
Strand = Plus / Minus
Query: 1 ttaatttttaaaaattgtcccacttagggcacctttatgttttaaaagcattaccattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttaatttttaaaaattgtcccacttagggcacctttatgttttaaaagcattaccattag 387
Query: 61 caggttacttcaaattgttcctgtcagctagggctgggggtagctctgatgatgttcccc 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 386 caggttacttcaaattgttcctgtcagctagagctgggggtagctctgatgatgttcccc 327
Query: 121 cagtgaataataatttgtttcaaattttaaaggacaaaactcattcttggcaacctcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagtgaataataatttgtttcaaattttaaaggacaaaactcattcttggcaacctcctg 267
Query: 181 gagggagaagaactatttccagtgctctttaatacatcttgaaataatttatgaaacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagggagaagaactatttccagtgctctttaatacatcttgaaataatttatgaaacttt 207
Query: 241 gcgaat 246
||||||
Sbjct: 206 gcgaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no053_m05.g1 MSMg01no053_m05.g1 CHROMAT_FILE:
MSMg01no053_m05.g1 PHD_FILE: MSMg01no053_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:46 2005
(288 letters)
>mm_chr19_21143441_21144127
Length = 687
Score = 511 bits (264), Expect = e-149
Identities = 282/288 (97%), Gaps = 1/288 (0%)
Strand = Plus / Minus
Query: 1 catgaggatgggctgggtgaacatgagggaatgctagagagagatgggactcagagatgt 60
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 487 catgaggatgggctgggcgaacatgagggaatgctagagagagatgggattcagagatgt 428
Query: 61 cttataggtccaaaaaatttctgctttgcttagagaacgaggaggcataggatggttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cttataggtccaaaaaatttctgctttgcttagagaacgaggaggcataggatggttaaa 368
Query: 121 ccgccagaagttttatgttttaaaatgttcctttgtattgtcataagaaacgtggaggaa 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 367 ccgccagaagttttatgttttaaaatgtttttttgtattgtcataagaaacgtggaggaa 308
Query: 181 atggataagagcaaactcccagggaccaagaactaacatggcggccatgggtttagaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atggataagagcaaactcccagggaccaagaactaacatggcggccatgggtttagaagt 248
Query: 241 agcttagtttctctttttttcttctttaaaggaattaggagatcattt 288
||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 247 agcttagtttccctttttt-cttctttaaaggaattaggagatcattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
