BAC Information

Click to search

BAC

Clone NameMSMg01-054C23
Chromosome14 (Build37)
Map Location 82,645,184 - 82,645,413
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054C23.T7 (MSMg01no054_c23.b1)MSMg01-054C23.TJ (MSMg01no054_c23.g1)
ACCAG282191AG282192
length747767
length of high quality
(start - end)
---232 (187 - 418)
definitionCHROMAT_FILE: MSMg01no054_c23.b1 PHD_FILE: MSMg01no054_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:19 2005CHROMAT_FILE: MSMg01no054_c23.g1 PHD_FILE: MSMg01no054_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGTTTGGTGTGGGGGCTCGAAAANAAAANCCCCCCGAGCGGCGACATTA
TAATTGGGCGGCAAAGATCACATTCGTATTGACGGNGGANNNTGCGTTTC
CTTATTAGGGTTNNTTGTNANNNNATAATAAAGAAAAGTTTAATGTTTTC
ACCCTATAGTGGTAAAAAAATAGTGAGGAAACAGTGAAGTAAATAAAAGT
AAAGCAGTAGAAANAGGGNAAGCCCCAAATGATGAATATCCATGACTGAT
GTCAGAGTCCTCTTCAGATCTCCAATTCCTTTTATTTATGATGAATTGAA
TACATATATAACTCTAAGTCTACATATAGATATAAATGGAAGGGGTTTTT
GTGTTTTTGGAAGAAAGGAGAAAAGAAAAGAGGNGGATTTTTTTTTTCCC
CCCCCCCCCGGGGGGGGGGATTTTTTAATTTTTTTAGTGTTTAAGGGTAA
AAAAAAAAAAAAAAAAAAATGGGGAAGTTGAGTGGGGAGTTATTAGAGGG
TATTAGGGTAGTGGTAGGGAGGTGAGTGTAATTTATTAAAAAAATTGAAA
AAAAATAATATTGTAAAGGGTAAGTATTATGAGAGAGGGGTGTGTGATAA
TAGAGATTGGTTATTTTGTTGGAGATAAATATTTAAGTAAGAGTAAGATG
TTTTGATAATTTAGTTGTTGTGTTATTAATTAATTGTGATGTTGGTGTGT
TATAATTTTTTTTGTTTTTTTTGAGGTTGTATATTATGTGATTAATA
NCCCTTTTTTTNCNNNNNNCCCCCCCTCGTTTTCCTATCTTTCCCTATTT
CTANTANATCACTATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTATAAATGCC
ACCTGATCATAGCCACTGAAGTAAATTATAAACCACCCTTATTAAATATT
ACCCTTCATTTATATTTTATTATCGCTCATCAATTTGTTTAATTCTCTGA
ACTATCCTTGCATATACTCTTAGGCTAATGTATACATTTTATATATTTGA
GAATAGTTATATTCAAAATAATATAGGACACATCTAAATTATACACCATA
GCTCTTCTATATGGTGTACCATAGCACTTATATTCCTCCTCCACAGGTAG
AATGTTATTTAAGTTATTTTTATAGTTCCTCCCCCCCACAGAAAAGTTAG
GGAATTTAAGTAAAATTTCAAACCCATTTATCATTGAAAATACATGTTAA
GGAAGACATTTTAGATCACCTTGGAAGAGAATTAAAGCACCAAATTAAAA
ATCAAACAAACAGTACAATGAAAAGACATAATAACTTCCCTTCAATGTGT
AGACTTTGAGACAGAATCTCTTATCTAAGTGAAAAAAAGGAAAAGATCCT
TGTAGTAGTTTGTGTTTTGCCTCAAGAAAAATGTAGTTTTATATTAATCT
GAGTTCTGAAAGAAAGACAACGGCATGAGCTTAAGATTGGTTATTTCCAT
CTGGTTACTCTACAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_c23.g1 MSMg01no054_c23.g1 CHROMAT_FILE:
MSMg01no054_c23.g1 PHD_FILE: MSMg01no054_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:19 2005
         (232 letters)



>mm_chr14_82644984_82645615
          Length = 632

 Score =  429 bits (222), Expect = e-125
 Identities = 228/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttattaaatattacccttcatttatattttattatcgctcatcaatttgtttaattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccttattaaatattacccttcatttatattttattatcgctcatcaatttgtttaattct 371

                                                                       
Query: 61  ctgaactatccttgcatatactcttaggctaatgtatacattttatatatttgagaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgaactatccttgcatatactcttaggctaatgtatacattttatatatttgagaatag 311

                                                                       
Query: 121 ttatattcaaaataatataggacacatctaaattatacaccatagctcttctatatggtg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttatatacaaaataatataggacacatctaaattatacaccatagctcttctatatggtg 251

                                                             
Query: 181 taccatagcacttatattcctcctccacaggtagaatgttatttaagtta 230
           |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 250 taccatagcacttagattcctcctccacaggtagaatgttatttaagtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)