BAC Information

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BAC

Clone NameMSMg01-054I08
Chromosome14 (Build37)
Map Location 23,316,035 - 23,316,277
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075
Downstream geneEG435392, LOC665068, Kcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054I08.T7 (MSMg01no054_i08.b1)MSMg01-054I08.TJ (MSMg01no054_i08.g1)
ACCAG282435AG282436
length795715
length of high quality
(start - end)
243 (132 - 374)158 (74 - 231)
definitionCHROMAT_FILE: MSMg01no054_i08.b1 PHD_FILE: MSMg01no054_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:43 2005CHROMAT_FILE: MSMg01no054_i08.g1 PHD_FILE: MSMg01no054_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNTTTTNNNNNNNNNNNNNTTGTCCCCCTCTCTTCNCCGCACTCCC
CCCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAGAG
GATCCGCGGAATTCTCTGTTTTCATCCCTAAGGTAGCAAGCCTACTGCTA
CCTGGTGTGCACAGAGAGGGCTAGGTTATCACTTGGTGTGTCTTACTTTA
TAGAAGACTAGTCATCATGCAAGGAAGTCGGGCAAGCATGTTCAGCCTGA
CATAGCATGGGCAGAGTCAGAGCTACTAGACTTACTTAGCTATGGTGACT
TTGCCCTTGGTAAATCTGCTTCGGTGTGTTGGCCCTCCACCTAAAACCAA
GCACATCTGTACACACCCTTGCATGTTATTCAAGGGTAGTTTGTTGGACT
CCTTACCAAGTCAAATACTTCTCTACCTGACTTATGAAAGGTTATTGTGT
GAGATGACATATACTGGTGTGCCCCCCCATGCACACACATCTATTTATAT
GCCTGCCTATGCATATACATTATATGTATTTGCTTACATATCCAAAACGA
CTACCGACATTTCAACTTATCTTCCTCTGATTAATATCTCATTATCACTC
ACTATTCAATGATTCCTGACACCCCTTCTGCTTCTGCGAACCTATTTTGC
GACGTCCCCTGATCTTAAAGGCTTTTGCCTCGCTCTGTTTTTCCCCTCCA
ATTGTTCTTCCCTCCCTTGTATTTCCTGGCTGTACCTTTTTCCCCTCTCC
TATCATATATACGGTGTTCTGCAACTTTCTTTCAGGTTCTAATTN
AATGCAGTGCGAAGCCTGGAGGCCGCCTGTTTCTCACCAGGGAGGTGACA
CTATAGATTTATCAAAAAAAATTCTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCTTTTATTTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCACATGCTCCAGAAGATGCCCCAACGGGTAAGA
AGGACACATGCTCCACCACGCCCATAGTAGCCTTATTTATAATAGTCAGA
ATCTGTAAAGAACCTAAATGCCCCTCAACAGAGGAATGGATACAGGATAT
GCGGCACATCTACAGAATGGAGTACTACTCAGCCTATTAAAAAGAATGAA
GTTATGAAATTCCTAGCCCAATGGATGGACCTGCGAGGCATCATCCCTGA
TTGAGTTATAACATTCACTAAGGATTTCTCACAATATGTTCTTCACTGAT
AATTGTTTTTTTATCCTTAACCCAACGATCCGATGAATATGAGATTCTAT
TTTCCTAAGACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_i08.b1 MSMg01no054_i08.b1 CHROMAT_FILE:
MSMg01no054_i08.b1 PHD_FILE: MSMg01no054_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:43 2005
         (243 letters)



>mm_chr14_23315835_23316477
          Length = 643

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtagcaagcctactgctacctggtgtgcacagagagggctaggttatcacttggtgtgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 201 ggtagcaagcctactgctacctggtgtgcacagagagggctaggttatgacttggtgtgc 260

                                                                       
Query: 61  cttactttatagaagactagtcatcatgcaaggaagtcgggcaagcatgttcagcctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttactttatagaagactagtcatcatgcaaggaagtcgggcaagcatgttcagcctgac 320

                                                                       
Query: 121 atagcatgggcagagtcagagctactagacttacttagctatggtgactttgcccttggt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagcatgggcaaagtcagagctactagacttacttagctatggtgactttgcccttggt 380

                                                                       
Query: 181 aaatctgcttcggtgtgttggccctccacctaaaaccaagcacatctgtacacacccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 aaatctgcttcggtgtgttggccctccacctaaaaccaagcacatctgtacacccccttg 440

              
Query: 241 cat 243
           |||
Sbjct: 441 cat 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)