BAC Information

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BAC

Clone NameMSMg01-054O20
Chromosome14 (Build37)
Map Location 108,775,071 - 108,775,356
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054O20.T7 (MSMg01no054_o20.b1)MSMg01-054O20.TJ (MSMg01no054_o20.g1)
ACCAG282733AG282734
length706772
length of high quality
(start - end)
661 (46 - 706)289 (80 - 368)
definitionCHROMAT_FILE: MSMg01no054_o20.b1 PHD_FILE: MSMg01no054_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:13 2005CHROMAT_FILE: MSMg01no054_o20.g1 PHD_FILE: MSMg01no054_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACCCTTCCCATTCTATGAAGCCACAATTATTCTGATACCTAAAC
CACAGAAAGATCCAAGAAAAATAGAGAACTTCAGACCAATTTCCCTTATG
AATATAGATGCAAAAATCCTCAATAAAATTCTCACTAACCGAATCCAAGA
ACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGA
TGCAGGGATGGTTTAATATATGGAAATCCAACAACGTAATCCATTATATA
AACAAAATCAAAGACAAAAAAACACATGATCATCTAGTTAGATGCGGAAA
AAGCATTCGACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAAAGA
TCAGGAATTCAAGGCCCACACCTAACCATGATAAAAGCAATCTACAGCAA
ACCAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTTGAAGCAATCCCAC
TAAAATCAGGGACTAGAAAAGGCTGTCCACTCTCTCCATACCTATTCAAC
ATTGTTCTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAA
GGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATG
ATATGATAGTATATATAAGTAACCCTAAAAATTCCACCAGAGAACTCCTA
AACATA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAAGACAGGGGAGTTGCCA
AAATTTCTAGCCCCTAACTAAGAAGTGATTTGCAATGAATGCTAGCTGGA
AAAGGAAAAAAGAAAATCTCCAAAGGAGCATTCCTAGCCATAGCAACTGC
ATGCAGAGTAGGCACTGGGCACAGGCTTTTGCTTTGTTCTGTTTTTTGTG
TTTTTGCTTGTTTTATGTTATTTTACTTTTGTAGGGACTTTTTGTTAATT
TTTGTGGTAATTTTATTCTGAGGAATTTTTTGTTGTTGCTCTTGGCTTGC
TTTGATTTTTATTAGTTTTCAGCTTGGTTGATGTTATTGTTTGTTTGTTT
TTTTGCCCNNCCCCCCCCCCCCTNAAAAAAATAAAATTCANATATTTTAA
ATATATATAATTTCTCATCACTACCACCACAACACAAATCCTCTTTTTTT
TTCCCTCTCTAATTACTTTTATTCTCTTTCATCATTTATCCTCCATATTA
TATCCTCCATCCACTCCAATACCCCCTTTATATATAACCTTCTCTTTCTT
ACACTACTCTCTATATATCTTATAATAACACACTTTTATACCTTATTATA
CAATAATACCCACATAATTAATTCAACCCCCCACCATCCTTCTATCTTTT
ATTTATATTTCCACCCCCCTTTTTTTCTTTCTCTCTCTCCCCCTCACTAC
ATATTATTTCTCACTCCTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_o20.g1 MSMg01no054_o20.g1 CHROMAT_FILE:
MSMg01no054_o20.g1 PHD_FILE: MSMg01no054_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:13 2005
         (289 letters)



>mm_chr14_108774869_108775557
          Length = 689

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   caagacaggggagttgccaaaatttctagcccctaactaagaagtgatttgcaatgaatg 62
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 caagactggggagttgccaaaatttctagcccctaactaagaagtgatttgcaatgaatg 262

                                                                       
Query: 63  ctagctggaaaaggaaaaaagaaaatctccaaaggagcattcctagccatagcaactgca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 ctagctggaaaaggaaaaaagaaaatctccaaaggagcattcctagccatagcaactaca 322

                                                                       
Query: 123 tgcagagtaggcactgggcacaggcttttgctttgttctgttttttgtgtttttgcttgt 182
           |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 323 tgcacagtaggcactgggcacagccttttgctttgttctgttttt-gtgtttttgcttgt 381

                                                                       
Query: 183 tttatgttattttacttttgtagggactttttgttaatttttgtggtaattttattctga 242
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttatgttatgttacttttgtagggactttttgttaatttttgtggtaattttattctga 441

                                                          
Query: 243 ggaattttttgttgttgctcttggcttgctttgatttttattagttt 289
           ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 442 ggaattttttgttgttgttcttggcttgctttgatttttattagttt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)