BAC Information

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BAC

Clone NameMSMg01-056H18
Chromosome14 (Build37)
Map Location 71,700,088 - 71,700,327
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC100043136, LOC668477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056H18.T7 (MSMg01no056_h18.b1)MSMg01-056H18.TJ (MSMg01no056_h18.g1)
ACCAG283884AG283885
length728785
length of high quality
(start - end)
240 (76 - 315)---
definitionCHROMAT_FILE: MSMg01no056_h18.b1 PHD_FILE: MSMg01no056_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:10 2005CHROMAT_FILE: MSMg01no056_h18.g1 PHD_FILE: MSMg01no056_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGAATCCGCG
GAATTCTCCCCTTTTCCCATGAATGTAACTAGAATCCCCATACCTTCCCA
TAATATTCAGGTAGGTCATCTACCCTGAGCAGTAGCTCCATACAGATACC
TGGGCGTCTTTTCCATAAGGTTCCAGTTGCTGTGTGCTTGCTGGTGCCTC
TCACTGTTCCTGCTTCCTAGCCTCATGTGAGATCTCCTTACTTCTCTCCA
TCTCCATCCCCAGTGTAAACTCGATTGCTCATTCGCTTTAGTTCATCTTA
GCTAATTCAGTAGTAGCCTTTCTACTTGTCCCTTACTTCAACTTGTGTCC
GCAGGTACTCCATTCCTATTCAGCCAGCACAGATAAGGCTTTAAATACCA
GTCGGATTCCCTTGCTCATCTACTTGCTCGAAACTTTTCACTGATTGCCC
TTTGTATCTTGAATGAAATCCAAGCACTCTATTGTGGATGAACAAACCCT
GTTCAGTTCCCTGATAAGGACCCATCAAACAAGTGACTAGTGTTCTGCAG
CTGTGCCTCTTGGAACTGACACCTCTCATCATTTTTGTATGGTTCTCTTA
TAAGGTACATCTGCTCCCCTAAGTCCTCTTTTGACTTCGACCTCTTGTAA
AAACTTGACTCTGTGTATGCTTGTCTAATATTAGTTCACGTTATTTGCAT
ATTCCCGTTGCTTAATCTCACTTATCTC
CGAATGCTCTGCGTGGCCTGGCGCCGCCTGGTTCAGACTTTGGGTGACCT
ATAGAATTTTCGCGGAATTCCTCACGATATCACCCTTTCTCTTCAGTGAT
GCTGGCAAAGATGTTTCCCCCTTGTGTTAACTTATGACACAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGATATACAGCTACTCTTTCCTTCCCTTTCTTTTTC
TCCTCTCCCTTTTTTTCTCCTTCTTTTTTTCCTTTTTTTTTTTTCTTTCT
TTTCCCCCCCCTCTCCTTTTTTTTTTCTTTTTCTTTTCTCTCCTCCCCTT
TTTTTTTTGTTTTTCCTCTTCCCTTCTCTTCCCCCCTGGCCCTTTTCCTT
CCTCTCCCCCCTCCCCTCCCCCCCCCCTCTCTCCCCCCCCCCTCCCCCTT
CATCCCTTCTTTTCCTTCCTCTTATCTTTCTTTCCTCCCTTTTTTTCTTT
CTTCTTTCTTTTCTTCTTTATCCTTCCTCTTTTTCTTTTCCTCTTCTTAT
CTCTTTCTCTCTCTTCTTCTTCTTCCTTCTTTTTTTTTTTTTCCTCTTCT
TCTCTTTTCTCCTTTTTCTCTCTTTGTTTTCTTCTTCCCTTTCCCTTCCT
TTTCTCTCTCTTCTTCTCCTTCTTCTCCCTCTCTCCCTCTTCCTTCCCTC
TCTCCCTTCCTCTCTCTCTCCTCTTTCCTTCTTTTTTTTTTCTCTCCCTC
CTCCTTCTCTCTCCTCCCCTCCTCTCCCTCGCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_h18.b1 MSMg01no056_h18.b1 CHROMAT_FILE:
MSMg01no056_h18.b1 PHD_FILE: MSMg01no056_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:10 2005
         (240 letters)



>mm_chr14_71699888_71700527
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taactagaatccccataccttcccataatattcaggtaggtcatctaccctgagcagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 taactagaatccccataccttcccataatattcaggtaggtcatcaaccctgagcagtag 381

                                                                       
Query: 61  ctccatacagatacctgggcgtcttttccataaggttccagttgctgtgtgcttgctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctccatacagatacctgggcgtcttttccataaggttccagttgctgtgtgcttgctggt 321

                                                                       
Query: 121 gcctctcactgttcctgcttcctagcctcatgtgagatctccttacttctctccatctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcctctcactgttcctgcttcctagcctcatgtgagatctccttacttctctccatctcc 261

                                                                       
Query: 181 atccccagtgtaaactcgattgctcattcgctttagttcatcttagctaattcagtagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atccccagtgtaaactcgattgctcattcgctttagttcatcttagctaattcagtagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)