BAC Information

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BAC

Clone NameMSMg01-056L14
Chromosome14 (Build37)
Map Location 111,312,873 - 111,313,199
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772
Downstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056L14.T7 (MSMg01no056_l14.b1)MSMg01-056L14.TJ (MSMg01no056_l14.g1)
ACCAG284062AG284063
length716725
length of high quality
(start - end)
477 (45 - 521)366 (73 - 438)
definitionCHROMAT_FILE: MSMg01no056_l14.b1 PHD_FILE: MSMg01no056_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:28 2005CHROMAT_FILE: MSMg01no056_l14.g1 PHD_FILE: MSMg01no056_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATATT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGATGGTGTCTTTTGTCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTAGAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTTACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCATGTGA
TCCATATGTGTGTGTATTCATTTCTGGGTCTTCAATTCTATTCCATTGGA
CTACTTGTCTGTCCCTATACCAGTTCCATGCCGGTTTTATCACAATTGTT
CTTGTTTATAGCTTTATTTTTTGCTTTGATGATTCCCCCGAAAGTTTTCT
ATTCCTTTATAAGACT
CATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGAAGCATGGAAACTTGACAGAACAA
TTGTTCTTAGAAATTAATCTTGTGTGCTCTGTATAGCTTGCATTGTACCC
TGGCAACTGCAACTGCAATGATCCTGGCAATTGCCATTATATTCTCTTTC
TGATAAAGGGGTAAAACGTCTGATTGCTCTCAATAAAATTGTTACAGCCA
TAATCTTGCTGTTGCCCTGCCAACCTGAGCCTGGTTTCATTCCTTGTGGC
GATGTCAGTTGACTTTGGCATTGGCACTGACATATATTCATTGTCATTGC
TCTGCATTTATATGTCAGCTGAAAATTTAGAAAATTATATATATATACAC
GTACACACACACACACACACACACACACACACACACACACACATACACAC
ACACACATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATACTATGTATATAAATGCATTAGATTAAACTAAAATTCTAT
CAGTATTTTATAAATTCTCTTTTATTATATTTAAATTAATATTAAACTAT
ATTTTTAAACTCTCTTTTTATTAAACCTATATAACAATTTTCTATTACCC
ATTAAACCACATCTTAAATACTTCCCATTTTTTTTTTCTTCTTTCATATC
CCCTACTTCCTTTACCTCTTACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_l14.g1 MSMg01no056_l14.g1 CHROMAT_FILE:
MSMg01no056_l14.g1 PHD_FILE: MSMg01no056_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:28 2005
         (366 letters)



>mm_chr14_111312673_111313440
          Length = 768

 Score =  567 bits (293), Expect = e-166
 Identities = 318/327 (97%), Gaps = 2/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaagcatggaaacttgacagaacaattgttcttagaaattaatcttgtgtgctctgt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 aaggaagcatggaaacttgacagaacaattggtcttagaaattaatcttgtgtgctctgt 260

                                                                       
Query: 61  atagcttgcattgtaccctggcaactgcaactgcaatgatcctggcaattgccattatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagcttgcattgtaccctggcaactgcaactgcaatgatcctggcaattgccattatat 320

                                                                       
Query: 121 tctctttctgataaaggggtaaaacgtctgattgctctcaataaaattgttacagccata 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtttctgataaaggggtaaaacgtctgattgctctcaataaaattgttacagccata 380

                                                                       
Query: 181 atcttgctgttgccctgccaacctgagcctggtttcattccttgtggcgatgtcagttga 240
           |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct: 381 atcttgcttttgccctgccaatctgagcctggtttcattccttgtggcaatgtcagttta 440

                                                                       
Query: 241 ctttggcattggcactgacatatat--tcattgtcattgctctgcatttatatgtcagct 298
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 441 ctttggcattggcactgacatatatattcattgtcattgctctgcatttatatgtcagct 500

                                      
Query: 299 gaaaatttagaaaattatatatatata 325
           |||||||||||||||||||||| ||||
Sbjct: 501 gaaaatttagaaaattatatatgtata 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 768
Length adjustment: 9
Effective length of query: 357
Effective length of database: 759
Effective search space:   270963
Effective search space used:   270963
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)