BAC Information

Click to search

BAC

Clone NameMSMg01-057N01
Chromosome14 (Build37)
Map Location 26,506,964 - 26,507,602
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669315, LOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik
Downstream genePpif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057N01.T7 (MSMg01no057_n01.b1)MSMg01-057N01.TJ (MSMg01no057_n01.g1)
ACCAG284879AG284880
length694698
length of high quality
(start - end)
557 (67 - 623)620 (72 - 691)
definitionCHROMAT_FILE: MSMg01no057_n01.b1 PHD_FILE: MSMg01no057_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:53 2005CHROMAT_FILE: MSMg01no057_n01.g1 PHD_FILE: MSMg01no057_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCG
GAATTCAGAACTGTCTGGTCTACTTCATGAAGCCCTGTCTTAAATACAAC
AATAATAACAAAGAAACAAAAACACTAACATGGGGTTGCCCTCCTCTTTG
TCATCCTTGTCCTCCCTCTTCCTCCTCCTCCTGCTAAGTCCTCTTCCTCC
TTCTCTCCCCTTTTTCTCTTACTCTTTTAACTCCTCCCCCTACTTCCTCT
TTTTTGAGATAAGGTGTCACTTATCTGTGGCCCAGGCTGACTTTGAACTC
GTGACAACCTTCCTGCCACCGATTCTGGGATTACTGCTATGAAGCCACCA
TGCTTTGTTCCTGGCATTCAGACTTGAAGGGCCCTGACGTCTCCCTTCAG
CTCGAATCCCTTTTGGCGTTTTTGTTTCTTTCTTAATTGTTGCTTTTTAA
GACAGGGTTTCATTACGTAGACCAGGCTGGCCTTGAACTCAGAGATCCAT
ATGCCTCTGACTCCTGAGTCCCGAAACTAAAGCCGTGTGCCAACCATGTT
TGCCTTAGCGTTAGTTTTAAAACTGAGATTCACTATGTATTCCTGGCTGG
TTTAGAACTGTCTGCGTAGCCCAGGCTGGCCTTAGACTTGTAATAATCCT
CCTCCCCCAGCCTCGTGAATGCTGAGAGTCCCAATTGACACAGT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTGGCGGGCAGAGCTCAGGCACGTTCTG
ACCAAGCAGCCCTTGCAAAGGCCCAAGCCTCACACCTAGGCAAGCGGGCG
TTGGCACCCTTGCTTTGGGATATCGGAGCACTGAAAACATTGCTATAAAG
CATAAAAAGTAAATTAAGGTGGAGTTGTTACCTGCAAAGAGTAATTCTGG
GCTGGCTCTCTCTGTTGACTCTGGGTGTGAACGGCACGTACGAGTGTGTT
CGGGGCGTCAGGCTTATGGGCTGCTCAGGTGTTGGACTGAGGACTGGCAG
CACAGTCCTCTGGGACAGGAAGGCCTGGCCATGGGAGGAGAGTGCAGGCT
GTGCACTGCATTGGCCTGAGTTCAAGTCTAACCCAACCTCCTGGAACCCT
TCCTTACAAAGTTATTAAGACTAGTTGGACCAGGTGTGGTACACAGCTTT
AACACCAGCACTCAGGAGGCAGAGACAAGTGTGTCTATGTGTGTTTAAGG
CCAACCTGGTCTACATAGTAAGTTCCAAGACAGCCAGAGCTACTCAGAGA
GACCCTGCCCCATTCACCTCCCCACCCCACCCCCATCTATGTAATTAAGC
AGTGCCAGGCTAACTGAAGCAATGGCATCTGACACAATCTATCTCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_n01.g1 MSMg01no057_n01.g1 CHROMAT_FILE:
MSMg01no057_n01.g1 PHD_FILE: MSMg01no057_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:53 2005
         (620 letters)



>mm_chr14_26506795_26507814
          Length = 1020

 Score = 1006 bits (520), Expect = 0.0
 Identities = 599/652 (91%), Gaps = 45/652 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggcgggcagagctcaggcacgttctgaccaagcagcccttgcaaaggcccaagcctc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 170 tgtggcgggcagagctcaggcacgttctgaccaagcagcccttgcagaggcccaagcctc 229

                                                                       
Query: 61  acacctaggcaagc-gggcgttggcacccttgctttgggatatcggagcactgaaaacat 119
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 acacctaggcaagcaggg-gttggcacccttgctttgggatatcggagcactgaaaacat 288

                                                                       
Query: 120 tgctataaagcataaaaagtaaattaaggtggagttgttacctgcaaagagtaattctgg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgctataaagcataaaaagtaaattaaggtggagttgttacctgcaaagagtaattctgg 348

                                                                       
Query: 180 gctggctctctctgttgactctgggtgtgaacggcacgtacgagtgtgttcggggcgtca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 349 gctggctctctctgttgactctgggtgtgaacggcacgtacgagtgtgttcagggcggca 408

                                                                       
Query: 240 ggcttatgggctgctcaggtgttgga-------------------------------ctg 268
           ||||||||||||||||||||||||||                               |||
Sbjct: 409 ggcttatgggctgctcaggtgttggaggcctgaggactggcagctgaggactggcagctg 468

                                                                       
Query: 269 aggactggcagcacagtcctctgggacaggaaggcctggccatgggaggagagtgcaggc 328
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 469 aggactggcagcacagtcctctaggacaggaaggcctggccatgggaggagagtgcaggc 528

                                                                       
Query: 329 tgtgcactgcattggcctgagttcaagtctaacccaacctcctggaacccttccttacaa 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 529 tgtgcactgcattggcctgagttcaagtctaacccaacctcctggaacccttccttacag 588

                                                                       
Query: 389 agttattaagactagttggaccaggtgtggtacacagctttaacaccagcactcaggagg 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agttattaagactagttggaccaggtgtggtacacagctttaacaccagcactcaggagg 648

                                                                       
Query: 449 cagagacaagtgtgtctatgtgtgtttaaggccaacctggtctacatagtaagttccaag 508
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  
Sbjct: 649 cagagacaagtgtgcctatgtgtgtttaaggccaatctggtctacatagtaagttcca-- 706

                                                                       
Query: 509 acagccagagctactcagagagaccctgccccattcacctccccaccccacccccatcta 568
                  ||||||||||||||||||||||||| |||||||||||   |||||||||||||
Sbjct: 707 -------gagctactcagagagaccctgccccgttcacctcccc---ccacccccatcta 756

                                                               
Query: 569 tgtaattaagcagtgccaggctaactgaagcaatggcatctgacacaatcta 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgtaattaagcagtgccaggctaactgaagcaatggcatctgacacaatcta 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)