BAC Information

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BAC

Clone NameMSMg01-057N06
Chromosome14 (Build37)
Map Location 112,929,990 - 112,930,335
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057N06.T7 (MSMg01no057_n06.b1)MSMg01-057N06.TJ (MSMg01no057_n06.g1)
ACCAG284889AG284890
length704707
length of high quality
(start - end)
498 (67 - 564)479 (74 - 552)
definitionCHROMAT_FILE: MSMg01no057_n06.b1 PHD_FILE: MSMg01no057_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:54 2005CHROMAT_FILE: MSMg01no057_n06.g1 PHD_FILE: MSMg01no057_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGGGCACAGTTACAACACATATCAGCAGCAAAATGAGTGTAGAGAAAGG
TAATCAATTTTAATGCAAAATATATGTTGAGGCTGAGATCTCAGTGAGTT
GATTGCTATTTCGTGTGAATTTGACTCAAGTTAAAATTTGGGTTTTTTTT
GCAGTTTTTATTGACTCATTTATTCACTTTACATCCCAGTATCAGCCCCC
CCCCGGCCTATATTTCCTTTCCCCTCACAGCTTCTCCCTCATTCCCCCTC
CCCTTCTCCTTTGAGAAGGGGGACGTCCCCACTGGTTTCACCACCACCCT
AGCACATCAACTCATTCCAGAACTAGCTGCATCCTCTCTCTTTGAGGCAA
GAGAAGACAGTCCTATAAGGATCCACATGCAGGCAACTAATTCAGGAATA
GACTCTATTGTTGGGAAATCTGCATGAAGACCCAGTTATACATCTGCAAT
ATATGTGCTGGGCACCTAGGTCCAGCCCATGTATGCTATTTGGTTGGTGA
TTCCATCTCTGGGAACCCAGAAGGATCTAGATTAGTTTATCTGTTGGTCG
TCCGGTAGAGTTTCTCTAATGTTTGGCTGTGGGTATCTGCATCTGGTTTC
ATCATCTGCTGTGTGGAAACTCTCAGATGACAGCCATGCTAGGATCCTGT
TTGA
CAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGATGAATATCAACTTAAGGTAGAC
AGGAACTTCTTTTGGCTGAGAGTCACACAAAATATACAGTCCATTATTAT
AATGAAGGCATGGCTAGCACAGTATGAGTTTTCTCTGTGTAGACAGAAAT
CAGGAAATGAACAAATATGTAAGGTGAGTTTGTTGTAAAAAACTCAAATA
CTACCTCCAGTGTCATACTTCCTTTAGAAATATTCCCCCTCTAAAAGTTC
AGAACTTTCCAAATGGCATCCCCAGATGGAAAACATCTGTTCAACTATTT
GAAGTCATGGAGAGCATTGCAAATTCATATTTCAACAAATGATCATGTTA
TTCTCACGGGGAAATATATTCAACAACTGCATATTGATTCAGAGACAAGG
AACTAATGGGGCCTAGGTTCACAAAACAGTGACCATTCTTTGAGATTGTC
AAGAGGCATAGCTTTATGCAATATAGTGAGCTAGTCCCTATTGCTTTGCT
ATTGGACTCACGGAAATAAACTAAAAAATAACAAATTTTAGCCAGAGGAG
ATCTGTTGCCAGATCTTCACTCAGAGCTAATCTACATAACACCAGTCTTC
CGTTACACTCTGATATTACTGAAGCCTGCTCGCTATGCTTGTTCTTACAG
ATAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_n06.b1 MSMg01no057_n06.b1 CHROMAT_FILE:
MSMg01no057_n06.b1 PHD_FILE: MSMg01no057_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:54 2005
         (498 letters)



>mm_chr14_112929990_112930887
          Length = 898

 Score =  588 bits (304), Expect = e-172
 Identities = 334/346 (96%), Gaps = 4/346 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatatcagcagcaaaatgagtgtagagaaaggtaatcaattttaatgcaaaatatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cacatatcagcagcaaaatgagtgtagagaaaggtaatcaattttaatgcaaaatatatg 287

                                                                       
Query: 61  ttgaggctgagatctcagtgagttgattgctatttcgtgtgaatttgactcaagttaaaa 120
           |||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 286 ttgaggctgagagctcagtgagttgattgctatttcgtttgaatttaactcaagttaaaa 227

                                                                       
Query: 121 tttgggttttttttgcagtttttattgactcatttattcactttacatcccagtatcagc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 226 tttgggttttttttgcagtttttattaactcatttattcactttacatcccagtatcagc 167

                                                                       
Query: 181 cc----ccccccggcctatatttcctttcccctcacagcttctccctcattccccctccc 236
           ||    |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 166 cccccaccccccggcctatatttcctttcccctcacagcttctccctcattcaccctccc 107

                                                                       
Query: 237 cttctcctttgagaagggggacgtccccactggtttcaccaccaccctagcacatcaact 296
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 106 cttctcctttgagaagggggaggtccccactggtttcaccaccaccctggcacatcaact 47

                                                         
Query: 297 cattccagaactagctgcatcctctctctttgaggcaagagaagac 342
           ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 46  cattccagaactagctgcaacctctctctttgaggcaagagaagac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)