BAC Information

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BAC

Clone NameMSMg01-058D10
Chromosome14 (Build37)
Map Location 103,629,159 - 103,629,544
singlet/doubletsinglet
Overlap genePhr1
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441
Downstream geneLOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058D10.T7 (MSMg01no058_d10.b1)MSMg01-058D10.TJ (MSMg01no058_d10.g1)
ACCAG285182AG285183
length716702
length of high quality
(start - end)
384 (123 - 506)419 (60 - 478)
definitionCHROMAT_FILE: MSMg01no058_d10.b1 PHD_FILE: MSMg01no058_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:24 2005CHROMAT_FILE: MSMg01no058_d10.g1 PHD_FILE: MSMg01no058_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAACGACTCCTATATCGACAGGACCGCGGAATCTACACATTCC
CAATTTTATAAAACTTTCAAATTTATAAAACTTGTTTTAAAACAAGACAA
TTAGAAACTCGTTATAAAACGATTATCTAGACGAGAATTTTCCATTAGGT
TTAAGAACTATTTATTTAGCTAAGAGTTCTGAGGAGTGAAATGTCAGGAA
AATGACCCGCTAGCTTGGACATTTAGGGCAAGTTACTACAATTATTCTGT
GTTTTAGTTTACCTGAACCCTGAAGTGTAAATATATTATATTCCTGTATG
AAATCCCCTCCAAATAAAAATCTTTAAATAATGAAATGGTCAAAAACTGT
TTAGTTCACTGAGTTGTCTGTGGACTAAATTAATACAGATGCTGTCTGGA
ATTGAGCCTGTCAGAGAACAAGAACTACACATATAAAAAGTTAATTTATT
TTAACAGGAAATGACACTGAACTGTAAGAATACCTGGTACGAGGCCAAGT
AAACGTGGCTGGATCTAACTGGTATTGACAACACCCAAAACGAAAGAGCA
ATATTCATGGAGACTCAACACAGCTCATTAACAATGCGTGAGGGATCCTG
CTTTTGCTAGCCATGATCTGCTATGAATCGAGACTACACCCGGAAGATAC
ACATGCCTACCCCTAAAACCCGGGGGTCAGGGCCAGTGAGGTAATGAACA
ACCTCCACAATATTCG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTATAAACATCCATGTGCAGGTTTTTTTTGTGTGTGTGTGG
ACATAAGTTTCCAGCTTCTCTGAATAAATACATTCCAGAATCTGTAATTG
TCACTGGATCATATGGTCAGGATATGTTTAGTTTTGTAGGAAACTGCCAA
ATTCTCTCCCCCAGGGGATGTACCATTTATATATATGAAATAAAGCTTCC
AGTTGCATATGAGAGTTTGCATTGCTCTGTGTCCTCAGCGACATTTAGAG
TTGTCAGTGTTCTGGATTTTGGGCATTCTGATTGATGGATCTCATTGTTG
TTTCAATCTGTATTAGTGTGCTAACACCTGTCTAGAACTCCTTTTCAGGT
GCTGGTTTGTTATTTCTCTATCTACTTTGGGGACATATCAAGGATGTTTA
CTCACTTTTAAACTCCAACATTGATGTTTTGGCACTGATGGATTAAAGAG
TTCTTTTTTCTTTTCTTTTTTTAAAATTCACTTATTTATTTTATGTGTGT
GAGTACATCATTGCTGCCTTCAGGACACCCGGACAGGGCATCTGATCCCA
TTACAGATGGTCGTGAGTCACCGTGCGGTTGGCGGGAATTGAAATTAAGG
CCTCTGGAAAACAATTCGTGGTCTTAACTGCTGAACCTTCTCCCTAGCCC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_d10.b1 MSMg01no058_d10.b1 CHROMAT_FILE:
MSMg01no058_d10.b1 PHD_FILE: MSMg01no058_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:24 2005
         (384 letters)



>mm_chr14_103628959_103629744
          Length = 786

 Score =  688 bits (356), Expect = 0.0
 Identities = 378/386 (97%), Gaps = 2/386 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatctagac--gagaattttccattaggtttaagaactatttatttagctaagagttct 58
           ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ttatctagacaagagaattttccattagttttaagaactatttatttagctaagagttct 260

                                                                       
Query: 59  gaggagtgaaatgtcaggaaaatgacccgctagcttggacatttagggcaagttactaca 118
           |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gaggggtgaaatgtcaggaaaatgacccgctagcttggacatttaggacaagttactaca 320

                                                                       
Query: 119 attattctgtgttttagtttacctgaaccctgaagtgtaaatatattatattcctgtatg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attattctgtgttttagtttacctgaaccctgaagtgtaaatatattatattcctgtatg 380

                                                                       
Query: 179 aaatcccctccaaataaaaatctttaaataatgaaatggtcaaaaactgtttagttcact 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcccctccaaataaaaatctttaaataatgaaatggtcaaaaactgtttagttcact 440

                                                                       
Query: 239 gagttgtctgtggactaaattaatacagatgctgtctggaattgagcctgtcagagaaca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagttgtctgtggactaaattaatacagatgctgtctggaattgagcctgtcagagaaca 500

                                                                       
Query: 299 agaactacacatataaaaagttaatttattttaacaggaaatgacactgaactgtaagaa 358
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 agaactacacatataaaaagttaatttcttttaacaggaaatgacactgaactgtaagaa 560

                                     
Query: 359 tacctggtacgaggccaagtaaacgt 384
           || |||||| ||||||||||||||||
Sbjct: 561 tagctggtaggaggccaagtaaacgt 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 786
Length adjustment: 9
Effective length of query: 375
Effective length of database: 777
Effective search space:   291375
Effective search space used:   291375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)