BAC Information

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BAC

Clone NameMSMg01-058D12
Chromosome14 (Build37)
Map Location 21,466,474 - 21,466,663
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54
Downstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058D12.T7 (MSMg01no058_d12.b1)MSMg01-058D12.TJ (MSMg01no058_d12.g1)
ACCAG285186AG285187
length702692
length of high quality
(start - end)
190 (115 - 304)---
definitionCHROMAT_FILE: MSMg01no058_d12.b1 PHD_FILE: MSMg01no058_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:25 2005CHROMAT_FILE: MSMg01no058_d12.g1 PHD_FILE: MSMg01no058_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCGCTATACGGTCACTATTCGAAGAGGAGCCGCGGAATTCCTGT
TTTCGGAACGGCGCAAATTTCCCATGATCCTCCTACGCCTCCCAAATGCC
CACCATATGCCCCAATGCAAGCCCCCATGCCCACTTTTGAGCTCCCCAGA
TACTGCTTCTGCCAATCATGGGTCACTTTTGGAGTAGCATGGCTGTCTGA
GATTTCCAGTGGGACTCAGCCATTACCCAAAGTACCTGTTACTGGCTCTC
TCCTCACTCCCTTATGCCACTGGGGTTTCACTTCCAAATGCACTGTCTCC
ATGTAAACCTTGTTTTATGTACTTTGAGGAAGCATCCAAACTATGCAAAT
TTTTTTACCGACATGCACATACCGAGTTTTGTCCTACATCTTCTACGATC
ATTTTTATTCTCTATAAGAGTTGTTCTCTCTGCCTCTCGGTCTCTCTCTG
TCTCCCTGTCTGTCTCTCAATGTCTGTCTCCCTCTCTGTTTCTCTCTCTC
TCTCCCCTTCTAATCCACCTACCGCTCAACCCGTTATTTCTAGTTTTCTT
CTTGAATACCGCCTCTTTCCCATTTCATTTTGTCCCCCTACCATCTAACA
CTTCTCCTTTTTCCCTCCCCCCCCCCCAACGCCATCTTACACTCCCTCCC
ATTATTAAACCCGAATCCCCCGTATCTCTACCCTTACCCGTTTCCCTTTT
TT
CATGGCGTAGGCTGGCGAGCGCCTGTTCAACACATGGGGGTGAANTATAG
AATTCTCTACGAAATTCCCTGGGTTATTGAGTGTGTTTAAGGTTAGCCAG
TGCAACTTATTGACACCTAACTCATAACAAAATAATTATATACCTAACTC
TGGTTATACAGAGGGGATCTGAGTTCAGCCTGACTACCCAGCTTCACAAG
AATTTTCCAGTCCCTGGTGGTTATTTCATTTCCCGATCTATACTGTACCT
CCCACCGGCAATATTCCCTCTACTTCGGTTCTAACAACTAACATATTTCT
CCTTCCATTTCTTTTTACTTCGAGCGTTTCTGTTTATCCAAATTATTCGC
TATTAGAAGCCCTTTATTGCTCCTATTTTACATATATTCTACGCATTTAT
TGAGTTTTTGCTATACGCCACGGACGATAGTTAAACAGAAACAGATACTG
ACCTCCTGCAGCCTATAGCTATACAAGCATTAGTCCAGCCGTAATTGGGC
ATAGTGCTTTGTAGCACCGACGCCAGATGCCTCCGTTTGACTGTCTTCAT
ATACTTGCGATCTTTCCCCCGCCTTTCATCCCTGTTTGCCTCCGCGGCAC
CGCGGAGATTCGACCATTACCCCGACCGCCCAATATCCAATCGTGTCGTA
TCCATACCCTTCTTCACCACCTCCTTTCTTCTTCCTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_d12.b1 MSMg01no058_d12.b1 CHROMAT_FILE:
MSMg01no058_d12.b1 PHD_FILE: MSMg01no058_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:25 2005
         (190 letters)



>mm_chr14_21466274_21466863
          Length = 590

 Score =  352 bits (182), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcaagcccccatgcccacttttgagctccccagatactgcttctgccaatcatgggtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 atgcaagcccccatgcccacttttgagctccccagatactgcttctgccagtcatgggtc 260

                                                                       
Query: 61  acttttggagtagcatggctgtctgagatttccagtgggactcagccattacccaaagta 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttttgaagtagcatggctgtctgagatttccagtgggactcagccattacccaaagta 320

                                                                       
Query: 121 cctgttactggctctctcctcactcccttatgccactggggtttcacttccaaatgcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgttactggctctctcctcactcccttatgccactggggtttcacttccaaatgcact 380

                     
Query: 181 gtctccatgt 190
           ||||||||||
Sbjct: 381 gtctccatgt 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)