BAC Information

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BAC

Clone NameMSMg01-058M18
Chromosome14 (Build37)
Map Location 101,333,357 - 101,333,928
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf12, LOC100043413, EG668683, EG668684
Downstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058M18.T7 (MSMg01no058_m18.b1)MSMg01-058M18.TJ (MSMg01no058_m18.g1)
ACCAG285626AG285627
length701703
length of high quality
(start - end)
545 (74 - 618)572 (73 - 644)
definitionCHROMAT_FILE: MSMg01no058_m18.b1 PHD_FILE: MSMg01no058_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:08 2005CHROMAT_FILE: MSMg01no058_m18.g1 PHD_FILE: MSMg01no058_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGAGCCGC
GGAATTCTTTGTTTACATCTGAGCCCCATTTTTTTAATGGGGTTATTTGA
TTATCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CTCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTT
CATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCGTTGCTG
TTCTATTCAGGAATTTTTCACTGTGCTCATATCTTCAAGGCTTTCCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAAATAGGAATGGATCAATTCG
CATTCTTCTACATGATAACCACCAATTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCCTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAG
TGACCATCGGTGTGTGGGTTCATTTCTGGGTCTTAAATTTGATTCCATTG
GTCTACTTGTGTGTAGCTATACCAGCACTATGCCGTTTTTATCACAATTG
CTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAAGTTCTT
T
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAAGGGAGGTGA
ACTATAGATTGTCAGAGAAATTCTGGCTGTAATTCTATGTGTTGTGTATG
TGCTGATAACTTTTATTAACCCATTCAGAAGTACTTATGGAGCTCATCTT
TGTACTAGCTACTATGTTAGGGCATCCAGAGATCACAGTTCCTTTTCTTT
ATGTTATTTGTTGGATATTTCTGACAGGGTTTAAGAACAAACATACACAT
AAACACACACAAACAACTGCAGATTCATACACACATTGTTGTAGGGTTGG
AACGTATACAAAGGTAATTTGGGATTAGAATATGACAGAGACTGTGTAAA
AATAGGTCTTGCAAACTTTATATGCCCCAGTATAGGGGAACGCCAGGGCC
AAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGCAGGGGAGGGTATAGAG
AACTTTTGGGATAGCATTTGAAATGTAAATAAAGAAAATATCCAAAAACA
AAAAAACAAAATTAGAAGAAAATGTCACTGATTTCAAGGGAAATCTGATT
TCTACTCAGACAGAAAATATCTTTTTTCAAGTGTATAACGGGTCAGGAAG
CTCAGACATGGGAAACATATTGAAATTCAACTTTCGACATACGCTGAAAT
GGCAATTTTTTTTGCAAATGCTTGTGTAACATATCCTGAAAATGAAAGCA
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_m18.g1 MSMg01no058_m18.g1 CHROMAT_FILE:
MSMg01no058_m18.g1 PHD_FILE: MSMg01no058_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:08 2005
         (572 letters)



>mm_chr14_101333157_101334128
          Length = 972

 Score = 1067 bits (552), Expect = 0.0
 Identities = 567/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggctgtaattctatgtgttgtgtatgtgctgataacttttattaacccattcagaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 201 ctggctgtaattctatgtgttgtgtatgtgctgataacttttattaagccattcagaaat 260

                                                                       
Query: 61  acttatggagctcatctttgtactagctactatgttagggcatccagagatcacagttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttatggagctcatctttgtactagctactatgttagggcatccagagatcacagttcc 320

                                                                       
Query: 121 ttttctttatgttatttgttggatatttctgacagggtttaagaacaaacatacacataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctttatgttatttgttggatatttctgacagggtttaagaacaaacatacacataa 380

                                                                       
Query: 181 acacacacaaacaactgcagattcatacacacattgttgtagggttggaacgtatacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacacacaaacaactgcagattcatacacacattgttgtagggttggaacgtatacaaa 440

                                                                       
Query: 241 ggtaatttgggattagaatatgacagagactgtgtaaaaataggtcttgcaaactttata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaatttgggattagaatatgacagagactgtgtaaaaataggtcttgcaaactttata 500

                                                                       
Query: 301 tgccccagtataggggaacgccagggccaagaagtgggagtgggtgggtaggggagcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgccccagtataggggaacgccagggccaagaagtgggagtgggtgggtaggggagcagg 560

                                                                       
Query: 361 gcaggggagggtatagagaacttttgggatagcatttgaaatgtaaataaagaaaatatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaggggagggtatagagaacttttgggatagcatttgaaatgtaaataaagaaaatatc 620

                                                                       
Query: 421 caaaaacaaaaaaacaaaattagaagaaaatgtcactgatttcaagggaaatctgatttc 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 caataacaaaaaaacaaaattagaagaaaatgtcactgatttcaagggaaagctgatttc 680

                                                                       
Query: 481 tactcagacagaaaatatcttttttcaagtgtataacgggtcaggaagctcagacatggg 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tactcagacagtaaatatcttttttcaagtgtataacgggtcaggaagctcagacatggg 740

                                           
Query: 541 aaacatattgaaattcaactttcgacatacgc 572
           ||||||||||||||||||||||||||||||||
Sbjct: 741 aaacatattgaaattcaactttcgacatacgc 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)