Query= MSMg01no058_m24.b1 MSMg01no058_m24.b1 CHROMAT_FILE:
MSMg01no058_m24.b1 PHD_FILE: MSMg01no058_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:10 2005
(243 letters)
>mm_chr14_100332694_100333336
Length = 643
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%)
Strand = Plus / Minus
Query: 1 tcctctgcccattctgctggaatgcacgggatattcgggggaagcccctgtctctaagtt 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 tcctctgcccattctgctggaatgcacgggatattcgggggaagccgttgtctctaagtt 384
Query: 61 tccattcacctaaataagcgccctttatcagatgggagtctccagttagaagtaaaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tccattcacctaaataagcgccctttatcagatgggagtctccagttagaagtaaaggca 324
Query: 121 actaagtgactcagactgccataaaccaaggatcatggggactctagaagcggatagggt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 323 actaagtgactcagactgccataaaccaaggaacatggggactctagaagcggatagggt 264
Query: 181 gtaaaagaagataaagcagaagcagaacccctgactcagagcagcaggccaggtgcagcg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 263 gtaaaagaagataaagcagaagcagaacccctgactcagagcaacaggccaggtgcagcg 204
Query: 241 gaa 243
|||
Sbjct: 203 gaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_m24.g1 MSMg01no058_m24.g1 CHROMAT_FILE:
MSMg01no058_m24.g1 PHD_FILE: MSMg01no058_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:10 2005
(523 letters)
>mm_chr14_100224959_100225882
Length = 924
Score = 957 bits (495), Expect = 0.0
Identities = 516/523 (98%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 2 cactgctgttg-ttttaagctggtgagtgtgtattcgtttgttacaacacaagacgaatg 60
||||||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 202 cactgctgttgtttttaagctggtgagtgtgtatccgtttgttacaatagaagacgaatg 261
Query: 61 catcaccactgaaccgagtatgggaaccattcacgggctctctctgtcctccatttccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catcaccactgaaccgagtatgggaaccattcacgggctctctctgtcctccatttccca 321
Query: 121 taacctcccactcccatccccaaatgataaacacttatatcatttttccctctagaacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taacctcccactcccatccccaaatgataaacacttatatcatttttccctctagaacac 381
Query: 181 gtgttgtactagttttttggctctgtagaattcagcttcatctcttggcaaattgttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgttgtactagttttttggctctgtagaattcagcttcatctcttggcaaattgttcca 441
Query: 241 aaactcatcccccttcccctgtctgattccctctcttggttttcaggctatcttccaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaactcatcccccttcccctgtctgattccctctcttggttttcaggctatcttccaaac 501
Query: 301 aactgataacatacttttctaggaaaacgttatgacaactctttatttaaaacatttcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aactgataacatacttttctaggaaaacgttatgacaactctttatttaaaacatttcaa 561
Query: 361 agattccaaatacccgacagattaaaatccggctcctcctaaataagaaaaacatggcat 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agattccaaatacctgacagattaaaatccggctcctcctaaataagaaaaacatggcat 621
Query: 421 tggctcttgtctagagctccaacctttcaccccactcccctgcctctcttttcattgtta 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggctcttgtctagagctccagcctttcaccccactcccctgcctctcttttcattgtta 681
Query: 481 gcaggatgtgagacgtataatttgccatcaggaccattctgct 523
||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 682 gcaggatgtgagaagtataatttgccatcaggaccattctgct 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
