BAC Information

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BAC

Clone NameMSMg01-060C24
Chromosome14 (Build37)
Map Location 111,296,904 - 111,297,489
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772
Downstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060C24.T7 (MSMg01no060_c24.b1)MSMg01-060C24.TJ (MSMg01no060_c24.g1)
ACCAG286689AG286690
length700716
length of high quality
(start - end)
585 (67 - 651)369 (74 - 442)
definitionCHROMAT_FILE: MSMg01no060_c24.b1 PHD_FILE: MSMg01no060_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:52 2005CHROMAT_FILE: MSMg01no060_c24.g1 PHD_FILE: MSMg01no060_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGAATCTTATGCAGAAGCAGGAAGCCTTTATTCTATCTTAAGCTCAT
ACCTCAAGACTCCTCTAAAGCAGTCTATTTGTGCTGAGAGCCTCTAGCCT
CAATTAGAAAGATTTTTTTATACTAATTTGAGCAGGGGATGGGTATCTCT
AACCTAGCAGTTGCCTTCTTTGACAAGGGTGGAGCAGGGTTCTCCAGCCT
GGCAGTTGCCTTATTTGGCACATGAGCATTGGTCAGTGATGACTTCAGCC
AGCTTGAGCAATTTTATCTATCACCTCTGGAATTTTTGCCAAGTTCTCTC
TATTCCCTAATTGGCTCAGGCCCAGGGCAGTTTCACTCTGGAATAGTTTG
TGGTATTTCTATTAATCAGTTCACACTGGGGACAAGTAGGTTTAATATGG
AGTCAGCTAACAAATTGGAGTTTTTCCCACTGCCCATGGACCTCAATTTT
CATCTGATAAACTCTAAAGTGATTTGTTGCCCTATAAAAGTAAGTAGTAG
AGTTAATTCTTTCTCATCTTACACTTTGGTAGTTCCCATTAGCTACACAG
GAAAACCCAGATTTGTTTTAAACTATACCTCAATAGCTGAGTAGTTAAAT
GTTCTATCTGACCCTCATATGCTAATCTAACAACTTCCCATCCATGTATA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCGGGCTGGCCTTGAAC
TCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGC
GCCACCACTGCCCGGCTAGGAAACACACTTAAAAGAGCATATAAATACAA
TTTTTACATTCTGATTCACATTATTATTGTTATCTATGCTGTTTTATATG
TTCTGTATTACACAATTTAGAAAAGTCATGAACTTATTCTCCAAAGAATT
GATGCATATTAAATATAAGTGACACCTACTTGGCAAAAGTGTAATATTTT
AATAGACTGTGACAAATTTTATTATACAAAACTACCGTTTTTGGAAACAT
AAAGCTTCAGTTTTATAATGTTTGAATATATAACCACTCCTGGGCTCCGT
TACATGTTGTTAGCCGTGACATTGGCAGATTGGAGCTGTCATTGCTTTTA
CTCTGCCCGCATTGAAATATGTACTTCATTGAATATTCTATGAACTCAAG
AATTAAATAGAAACTTTTATAAGATTATACCCAAAGAGAGATTGGAGAAA
CTTTTCTTTCTCCTTGCGCTTGTTTGTCCGAACTTGTCGCGCCACTTATC
CCCCCCCCCCCCGCCCACCCCGCGAATAAACAACACCACCCCCCCACCAC
CGTTGCACGTTCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_c24.b1 MSMg01no060_c24.b1 CHROMAT_FILE:
MSMg01no060_c24.b1 PHD_FILE: MSMg01no060_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:52 2005
         (585 letters)



>mm_chr14_111296704_111297689
          Length = 986

 Score = 1056 bits (546), Expect = 0.0
 Identities = 576/586 (98%), Gaps = 1/586 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagcaggaagcctttattctatcttaagctcatacctcaagactcctctaaagcagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagcaggaagcctttattctatcttaagctcatacctcaagactcctctaaagcagtct 260

                                                                       
Query: 61  atttgtgctgagagcctctagcctcaattagaaagatttttt-tatactaatttgagcag 119
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 261 atttgtgctgagagcctctagcctcaattagaaagattttttcaatactaatttgagcag 320

                                                                       
Query: 120 gggatgggtatctctaacctagcagttgccttctttgacaagggtggagcagggttctcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggatgggtatctctaacctagcagttgccttctttgacaagggtggagcagggttctcc 380

                                                                       
Query: 180 agcctggcagttgccttatttggcacatgagcattggtcagtgatgacttcagccagctt 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctgacagttgccttatttggcacatgagcattggtcagtgatgacttcagccagctt 440

                                                                       
Query: 240 gagcaattttatctatcacctctggaatttttgccaagttctctctattccctaattggc 299
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 gagcagttttatctatcacctctggaatttttgccaagtactctctattccctaattggc 500

                                                                       
Query: 300 tcaggcccagggcagtttcactctggaatagtttgtggtatttctattaatcagttcaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaggcccagggcagtttcactctggaatagtttgtggtatttctattaatcagttcaca 560

                                                                       
Query: 360 ctggggacaagtaggtttaatatggagtcagctaacaaattggagtttttcccactgccc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ctggggacaagtaggtttaatatggagtcagctaacaaattggagtttttcccactgtcc 620

                                                                       
Query: 420 atggacctcaattttcatctgataaactctaaagtgatttgttgccctataaaagtaagt 479
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 atggacctcaattttcatctgataaactctaaagtgatttgttgtcctataaaagtaagt 680

                                                                       
Query: 480 agtagagttaattctttctcatcttacactttggtagttcccattagctacacaggaaaa 539
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 agtagagttaattctttctcaccttacactttggtagttcccattagctacacagaaaaa 740

                                                         
Query: 540 cccagatttgttttaaactatacctcaatagctgagtagttaaatg 585
           || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaagatttgttttaaactatacctcaatagctgagtagttaaatg 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space:   561200
Effective search space used:   561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)