BAC Information

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BAC

Clone NameMSMg01-060N10
Chromosome14 (Build37)
Map Location 21,426,631 - 21,426,879
singlet/doubletsinglet
Overlap geneUsp54
Upstream geneLOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb
Downstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060N10.T7 (MSMg01no060_n10.b1)MSMg01-060N10.TJ (MSMg01no060_n10.g1)
ACCAG287189AG287190
length720692
length of high quality
(start - end)
249 (73 - 321)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no060_n10.b1 PHD_FILE: MSMg01no060_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:40 2005CHROMAT_FILE: MSMg01no060_n10.g1 PHD_FILE: MSMg01no060_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGAT
CCGCGGAATTCAGGTGCCCCCTTAGATCCAGGTGCCAAAGCTGTCCTTCC
TTCACCTGCCCCAATGTTCAAAATGTAACTTGGCACATGACCAATGCAGA
GAGAAGTCTTTAAGTACTGCTAACGAAGCTATGTTGCTAAAACGGCCTCC
CTACACGCCTGGTGAAACAGATGGAATCCTCAAGTCAACAGTATTCAGGA
CCAAGCACAGCTTGTTCTTCAGCCCTTCTTACAATGCTTCTTGTGGACTG
AAGCCCGGAGGAAGTGGCAGGAACCTAGCACACTCCTCCTTGCCCTCTTA
GTGCCTTGTCTCATCATCCTCGAGCAAAACTCAAGCTCTGAACAACTGAG
GAGACACCACAAGCCGAGAAGTTTGTCTGCGTTCTCGGTAGGGCTGCTGT
TGATGTTCCTTGCTGTACCTTTTGGTTGTATTCCAAATTTCTTCTATCTT
CTCTACCAGATCTTCAAAAAGTCTCTTCTCCTTTCTTCTGAGATGAAAAT
AATCAGTTGCGCCAGAGAGCTTTATTCAAATGAAAAAAAATTCAAAAGCT
CACCTCATCTAATGACCCTACTCGCCTTTGCACTGATCCCGCCAAGAACC
AATGTTGGCCTCACCCTCTCCAGCATAATACTTCGAAATTCTTGAATAAA
CGATTGTTTTACAAGAAAAT
GAAGTGGGAGGCCTGGCGGCGCCTGGTTCCACAACTTAGGTGACCTATAG
AAGTTCCGCGAAACTCCAGGCCAGCCTGGGTCACAAAAGGTTACAGGCCA
GCTTATGCTTTATAGCAGGAAGACTTCAAAACAGGAAAAGGAAAGGAAGG
AAGGGAGGAAGGAAGGAAGAAAAAGGAACCTTTATATACTGTTGGTATTG
TAATTAGTATAGCCATTTTTGGAAAACAGTATGGATGTTTCTCAGAAAAA
CTAAAAATAGAAGTACCATATGATCCAGCAATCCCACTACTGGGTAAATA
CCCAATGAAATTAATATCAGGATGTTAAATGTCTGTACACCCACGTTCAT
TGCAGCATTATTCACAATAACCAAGATATGGAAACAACCTGAATGTCCAT
TAGCAGATGACCGCATTAAAAAAAGAGTAGTGTATACTACTGAGCCTTAA
AAAGGCCGGGAAATTCTATCACTTATGACCGGATAGGTGAGCCTGGATGA
CGTTATGTTCAGCGAGACCAGCCAGGCACAGGAAGACCACTACCACATGA
TCTTACTTACCTGTGGAACCTAAAAAGGATGCCCTCGTGACGGCAAGAAG
CATATTGCCCAGCCTCAATCCCCACATTTTGTTTGCACGCCAACAAACCC
CCTTTTCTTCTCTTCCCCCCCCTCCCCCCCCTATTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_n10.b1 MSMg01no060_n10.b1 CHROMAT_FILE:
MSMg01no060_n10.b1 PHD_FILE: MSMg01no060_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:40 2005
         (249 letters)



>mm_chr14_21426431_21427079
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatccaggtgccaaagctgtccttccttcacctgccccaatgttcaaaatgtaacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagatccaggtgccaaagctgtccttccttcacctgccccaatgttcaaaatgtaacttg 260

                                                                       
Query: 61  gcacatgaccaatgcagagagaagtctttaagtactgctaacgaagctatgttgctaaaa 120
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gcacatgaccaatgcagagaaaagtctttaagtactgctaaggaagctatgttgctaaaa 320

                                                                       
Query: 121 cggcctccctacacgcctggtgaaacagatggaatcctcaagtcaacagtattcaggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggcctccctacacgcctggtgaaacagatggaatcctcaagtcaacagtattcaggacc 380

                                                                       
Query: 181 aagcacagcttgttcttcagcccttcttacaatgcttcttgtggactgaagcccggagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcacagcttgttcttcagcccttcttacaatgcttcttgtggactgaagcccggagga 440

                    
Query: 241 agtggcagg 249
           |||||||||
Sbjct: 441 agtggcagg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)