BAC Information

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BAC

Clone NameMSMg01-061J23
Chromosome14 (Build37)
Map Location 38,831,013 - 38,831,370
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
Downstream geneNrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061J23.T7 (MSMg01no061_j23.b1)MSMg01-061J23.TJ (MSMg01no061_j23.g1)
ACCAG287789AG287790
length725740
length of high quality
(start - end)
359 (47 - 405)604 (77 - 680)
definitionCHROMAT_FILE: MSMg01no061_j23.b1 PHD_FILE: MSMg01no061_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:39 2005CHROMAT_FILE: MSMg01no061_j23.g1 PHD_FILE: MSMg01no061_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTATTATCTTTGACTCTCAGAGAAGCCCACACCAAGGCTCTGTAG
CATGCTCTTATTCTCCTCTATGCGCCCTGTCCTTCTGACTTAACCCCCAT
GGCTAAGCATATGTTAAAATATTTCTAATGAAATCTCCAACTCTTTTTTT
TTAATCATACTGTCTAGTCCTGAACTTATTTTTACCATCAAAATCTTCAT
TCTGTTTTATGTCATCTTTATCTTCTTACAAGTTTTGAGTTGAAGTCTAC
TTTATCCTATATTTTGATTCATTAGGGAAATTTTTTCATGACTTTGGTTT
GGTTGGTAGATTGCTTCCTTGCCATTGAACCAAATTATTGGATTGTGTGC
CAATGATGTTTAGTTTTCAGAGACAATAAACAGTTGATTCGGTTTTTAAA
TCAACTAGTTTTCTTAAAAAATATGGTGAGTGAATTTACTTAGGTAACTA
CTGAGAGCTATTTGCTATTTCCTAAGATTAACTTTGATGATTTCTAATTG
GCTAGATTATTGATATTTCTTTTTCCTTCCAGCAACTGCCTCCACTATAG
CTTTCTCACCAAGGAATTTGAGTTTGATGTTGGCTACCGGTTTGCTGCTT
ATGGCTTTTATCATATTTAGGTACGGGTCTTGAATTCCTGATCTTTACAA
GACTTTTATCATGAATGGCTGTTGC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCTGAGAAGC
ACTTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGGCAGCAGATGCTGGCGAGGATGTGGAGAAAGAGAAACACTCC
TCCATTGTTGGTGGGATTGTAAGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTATCAGAGGATCCCGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGTTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACTGAGATGCCCCTCAATATAGGAATGGATACAGAAAATGTGGTA
CATTTACACAATGGAACACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGGCAAATGGATGGACCTGGATGGCATCATCCTGAATGAGGTA
ACCCAATCACAAAAGAACTCGCGTATTATGTACTCACTTATAAGTGGATA
TTAGCCCAGAAATTTAGAATACCCAAGATATAAGATACAATTTGCTAAAC
GCATGATACTCAAGAAGAACGAAGACCAAAGTGTGTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_j23.b1 MSMg01no061_j23.b1 CHROMAT_FILE:
MSMg01no061_j23.b1 PHD_FILE: MSMg01no061_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:39 2005
         (359 letters)



>mm_chr14_38830811_38831570
          Length = 760

 Score =  677 bits (350), Expect = 0.0
 Identities = 356/358 (99%), Gaps = 1/358 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattccttattatctttgactctcagagaagcccacaccaaggctctgtagcatgctct 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaattccttattatctttgactctcagagaagcccacaccaaggctctgtagcatgctct 501

                                                                       
Query: 63  tattctcctctatgcgccctgtccttctgacttaacccccatggctaagcatatgttaaa 122
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tattctcctctatgtgccctgtccttctgacttaacccccatggctaagcatatgttaaa 441

                                                                       
Query: 123 atatttctaatgaaatctccaactc-tttttttttaatcatactgtctagtcctgaactt 181
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 atatttctaatgaaatctccaactcttttttttttaatcatactgtctagtcctgaactt 381

                                                                       
Query: 182 atttttaccatcaaaatcttcattctgttttatgtcatctttatcttcttacaagttttg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttttaccatcaaaatcttcattctgttttatgtcatctttatcttcttacaagttttg 321

                                                                       
Query: 242 agttgaagtctactttatcctatattttgattcattagggaaattttttcatgactttgg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agttgaagtctactttatcctatattttgattcattagggaaattttttcatgactttgg 261

                                                                     
Query: 302 tttggttggtagattgcttccttgccattgaaccaaattattggattgtgtgccaatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttggttggtagattgcttccttgccattgaaccaaattattggattgtgtgccaatg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 760
Length adjustment: 9
Effective length of query: 350
Effective length of database: 751
Effective search space:   262850
Effective search space used:   262850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)