BAC Information

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BAC

Clone NameMSMg01-061M08
Chromosome14 (Build37)
Map Location 30,530,748 - 30,531,089
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneLrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061M08.T7 (MSMg01no061_m08.b1)MSMg01-061M08.TJ (MSMg01no061_m08.g1)
ACCAG287902AG287903
length737728
length of high quality
(start - end)
401 (39 - 439)342 (70 - 411)
definitionCHROMAT_FILE: MSMg01no061_m08.b1 PHD_FILE: MSMg01no061_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:50 2005CHROMAT_FILE: MSMg01no061_m08.g1 PHD_FILE: MSMg01no061_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
GAGATGTGTGCTAAGTCTAAATTCTGTACAGTGGGTTAAGACAAACACCA
GGAAGAATTACACTTCAGGTTCAAAGACAGTGTGTAAAAGCATTTGCTTT
CAGTCAGGGGAGGCCAATCTTGGTCCAGTTAAGGCCTACTTCTGCTTGGA
TGAGACACCCATGCTATGGAGGATACTTTTCTTTACTCAGAGTCCACCCA
TCTAAGTGTTTATCTTGGAGGCTAAGGACATACTTCATGTTTAGTATACA
CAAGGCTCTATCTAGGTTCTCCCTTGCCACCACCATGTTAGTCTCATTCC
AAAAACAGCCTTCTAGATATAGCAATGTTTTCTCAAATACCTGGGACTGT
GGTCTAAACAAATTACCACATAAATATGACATGAGGCTGGAAATGCGGCT
CAGTGGTAGAGCACTTGCCTAAAACAGAAGAGCTCTACTAAATGCCACAA
AACAGTGACTAGATCAATGAGTGAACGAATGAATGAATAGCTAAGTCCGA
TGGTATAGGCTTGCCATCCCAGCTACTTAGGAGACCTAGGTATGTTGAAT
CCCTCCCGCCCCAGTCTGAACTACCGAGTTGAAGTTAAAGGCTAGGCCTA
GGATAACTCAACTTTAAAAATAATAATATTTACGCATTGTAAAACCCGTT
TTGGCACATATAACCCGGAACCGCTAATAACTGTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGACATCGCGGAAATCCAGAACAGAGAGGTGACCAAGCTACTCCTC
CCTCCCAAAAAGAACCCAGACAAAGCACATTCTTTGGGGAAAACGAAGCA
AGATTAGGCAGCTAAAAACTGGCATGGATATGTCAAATAGGAAGTTAATT
AAAAGCTGAAGAGAGTGGGAAGCCCTGCAGTATCTGCCAGTGAAGGAGGC
AGCTGACAGGCACACAGGGGCACACTAGCACTTGACTTCAGAGGGCCTCT
AACAACCCCAAAACTGCTCAGAATCCCTCCCATGTTCCACTCTACAGCCC
AGACACATAACTTTAAAAACTCTCTGACTCCCTGTGCTTTATAAGATCCA
AATGCCTGCAGCAAATGACATGAATAGATTGCTATTCCCATGTTCAACTA
AGGCAAATAGAGGAAGCTAATTGGGCAAGCCTGCATAGAAGACCTACTAG
AGCATCCTACGCTACAGGAGGGAGAATCATAGCACCAAATACAGTAACAT
CCAGGACACTGATCCTGTAGGGTAGCCGAACCACAGTGTCACCCAAGAGT
GTTTACTTTAGACTGCCAGTCACATTACCTTATCAAAGCCTGTTGCCAAC
ATGGTAGGCCTCCCAGCCTCCAAACACCCCCAAGTACACGCCGCATTCTT
TCTTTCACTTACCATCCCCGCAATTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_m08.g1 MSMg01no061_m08.g1 CHROMAT_FILE:
MSMg01no061_m08.g1 PHD_FILE: MSMg01no061_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:50 2005
         (342 letters)



>mm_chr14_30530548_30531289
          Length = 742

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagaacagagaggtgaccaagctactcctccctcccaaaaagaacccagacaaagcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagaacagagaggtgaccaagctactcctccctcccaaaaagaacccagacaaagcaca 260

                                                                       
Query: 61  ttctttggggaaaacgaagcaagattaggcagctaaaaactggcatggatatgtcaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctttggggaaaacgaagcaagattaggcagctaaaaactggcatggatatgtcaaata 320

                                                                       
Query: 121 ggaagttaattaaaagctgaagagagtgggaagccctgcagtatctgccagtgaaggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagttaattaaaagctgaagagagtgggaagccctgcagtatctgccagtgaaggagg 380

                                                                       
Query: 181 cagctgacaggcacacaggggcacactagcacttgacttcagagggcctctaacaacccc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cagctgacaggcacacaggggcacactggcacttgacttcagagggcctctaacaacccc 440

                                                                       
Query: 241 aaaactgctcagaatccctcccatgttccactctacagcccagacacataactttaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaactgctcagaatccctcccatgttccactctacagcccagacacataactttaaaaa 500

                                                     
Query: 301 ctctctgactccctgtgctttataagatccaaatgcctgcag 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctctgactccctgtgctttataagatccaaatgcctgcag 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)