BAC Information

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BAC

Clone NameMSMg01-061O06
Chromosome14 (Build37)
Map Location 30,530,749 - 30,531,395
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneLrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061O06.T7 (MSMg01no061_o06.b1)MSMg01-061O06.TJ (MSMg01no061_o06.g1)
ACCAG287994AG287995
length716721
length of high quality
(start - end)
678 (39 - 716)647 (70 - 716)
definitionCHROMAT_FILE: MSMg01no061_o06.b1 PHD_FILE: MSMg01no061_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:59 2005CHROMAT_FILE: MSMg01no061_o06.g1 PHD_FILE: MSMg01no061_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
GAGATGCGTGCTAAGTCTAAATTCTGTACAGTGGGTTAAGACAAACACCA
GGAAGAATTACACTTCAGGTTCAAAGACAGTGTGTAAAAGCATTTGCTTT
CAGTCAGGGGAGGCCAATCTTGGTCCAGTTAAGGCCTACTTCTGCTTGGA
TGAGACACCCATGCTATGGAGGATACTTTTCTTTACTCAGAGTCCACCCA
TCTAAGTGTTTATCTTGGAGGCTAAGGACATACTTCATGTTTAGTATACA
CAAGGCTCTATCTAGGTTCTCCCTTGCCACCACCATGTTAGTCTCATTCC
AAAAACAGCCTTCTAGATATAGCAATGTTTTCTCAAATACCTGGGACTGT
GGCCTAAACAAATTACCACATAAATATGACATGAGGCTGGAAATGTGGCT
CAGTGGTAGAGCACTTGCCTAAAACAGAAGAGCTCTACAAAATGCCACAA
AACAGTGACTAGATAAATGAGTGAATGAATGAATGAATAGCTAAGTCCGA
TGGTATAGGCTTGCAATCCCAGCTACTTAGGAGACCAAGGCAGGTGAATC
ACTCAGGGCCAGCCTGAACTACAGAGTGAGTTTAAGGCTAGCCTAGGANA
CTTAACTTAAAAATAAGAAGTTTAAGAATGACAAAGGGCTGGAGATATAG
CTGAGTGGTAGAATGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAACAGAGAGGTGACCAAGCTACTCCTCC
CTCCCAAAAAGAACCCAGACAAAGCACATTCTTTGGGGAAAACGAAGCAA
GATTAGGCAGCTAAAAACTGGCATGGATATGTCAAATAGGAAGTTAATTA
AAAGCTGAAGAGAGTGGGAAGCCCTGCAGTATCTGCCAGTGAAGGAGGCA
GCTGACAGGCACACAGGGGCACACTAGCACTTGACTTCAGAGGGCCTCTA
ACAACCCCAAAACTGCTCAGAATCCCTCCCATGTTCCACTCTACAGCCCA
GACACATAACTTTAAAAACTCTCTGACTCCCTGTGCTTTATAAGATCCAA
ATGCCTGCAGCACATGAAATGAATAGATTGCTATTCCCATGTTCAACTAA
GGCAAATAGAGGAAGCTAATTGGGCAAGCCTGCATAGAAGACCTACTAGA
GCATCCTAAGCTACAGGAGGGAGAACCATAGCACCAAACACAGGAACATC
CAGGACACTGATCCTGTAGGGCAGTGAACCACAGTGTTACCCAAGAGTGT
TTACTTTAGACTGCAAGTCACATTACCTAACAAAGCATGTTGCCAAAATG
GCAGGTCTCCCAGTCTCCAAACACCCCAAAGTAGATGGCCAATTCTTCTT
TCACTTATATTCACAGTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_o06.g1 MSMg01no061_o06.g1 CHROMAT_FILE:
MSMg01no061_o06.g1 PHD_FILE: MSMg01no061_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:59 2005
         (647 letters)



>mm_chr14_30530549_30531595
          Length = 1047

 Score = 1220 bits (631), Expect = 0.0
 Identities = 643/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacagagaggtgaccaagctactcctccctcccaaaaagaacccagacaaagcacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaacagagaggtgaccaagctactcctccctcccaaaaagaacccagacaaagcacat 260

                                                                       
Query: 61  tctttggggaaaacgaagcaagattaggcagctaaaaactggcatggatatgtcaaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttggggaaaacgaagcaagattaggcagctaaaaactggcatggatatgtcaaatag 320

                                                                       
Query: 121 gaagttaattaaaagctgaagagagtgggaagccctgcagtatctgccagtgaaggaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagttaattaaaagctgaagagagtgggaagccctgcagtatctgccagtgaaggaggc 380

                                                                       
Query: 181 agctgacaggcacacaggggcacactagcacttgacttcagagggcctctaacaacccca 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 agctgacaggcacacaggggcacactggcacttgacttcagagggcctctaacaacccca 440

                                                                       
Query: 241 aaactgctcagaatccctcccatgttccactctacagcccagacacataactttaaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactgctcagaatccctcccatgttccactctacagcccagacacataactttaaaaac 500

                                                                       
Query: 301 tctctgactccctgtgctttataagatccaaatgcctgcagcacatgaaatgaatagatt 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tctctgactccctgtgctttataagatccaaatgcctgcagcaaatgaaatgaatagatt 560

                                                                       
Query: 361 gctattcccatgttcaactaaggcaaatagaggaagctaattgggcaagcctgcatagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctattcccatgttcaactaaggcaaatagaggaagctaattgggcaagcctgcatagaa 620

                                                                       
Query: 421 gacctactagagcatcctaagctacaggagggagaaccatagcaccaaacacaggaacat 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 gacctactagagcatcctaagctacaggagggagaaccacagcaccaaacacaggaacat 680

                                                                       
Query: 481 ccaggacactgatcctgtagggcagtgaaccacagtgttacccaagagtgtttactttag 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ccaggacactgatcctgtagggcagtgaaccacagtgttacccatgagtgtttactttag 740

                                                                       
Query: 541 actgcaagtcacattacctaacaaagcatgttgccaaaatggcaggtctcccagtctcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actgcaagtcacattacctaacaaagcatgttgccaaaatggcaggtctcccagtctcca 800

                                                          
Query: 601 aacaccccaaagtagatggccaattcttctttcacttatattcacag 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aacaccccaaagtagatggccaattcttctttcacttatattcacag 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)