BAC Information

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BAC

Clone NameMSMg01-062B11
Chromosome14 (Build37)
Map Location 83,088,629 - 83,089,290
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062B11.T7 (MSMg01no062_b11.b1)MSMg01-062B11.TJ (MSMg01no062_b11.g1)
ACCAG288147AG288148
length1,1861,165
length of high quality
(start - end)
662 (126 - 787)300 (467 - 766)
definitionCHROMAT_FILE: MSMg01no062_b11.b1 PHD_FILE: MSMg01no062_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:19 2005CHROMAT_FILE: MSMg01no062_b11.g1 PHD_FILE: MSMg01no062_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCTCTNTTNNNNTGCCAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCACAGGCTCAACAAACCCATAAGGCCCCGTGATGATGCT
TCAGTTCCATTTGGGACCTTTAAGAAAACAATCACAAATGTGGAGGGAAG
AAGTGACTTGAGAGGGAAAGTAGGGGGAAGGGAGAGGGGAACCTGATCTA
GTATTGGGTGAGGGAAAAGGGCTGAAACATCAGGTTTTCATAGTCTCATA
GCAAACACCCTTACTTATTGAGGCTTTTTCTGTTCCAGTGATGTTTAAAC
TTAGTTTTGAATAAGACAGGATTCAGGATGACCATGAAGTAGCATTTCTG
GAAAGATCTATAATAGAAATGTTAGATTGGGTTAAGAAACATAGGCAGAT
CCTTTTTAATATAAGTGAACAAACAATCCCTTAGACTGTTATCAAAAATG
AACCCCATTTCCTGTAATTTGCTTTTGTAAGGCCTTTTGTCAGAGCAATT
AAAACATTGTTTAAAATATGATGTACTAACTGTGATCCTGCTTAACAATG
GCAAAAACTATTTTATAATGTATTCCAAAATTGGAAAAATCATCCAGAAG
GCAGATGAAATAATTATTACAGAGTCTCAAAGTTTGTACCAAATGGAAAT
GAGAAAAGCCACTTTCAAGACGTATGAAATTACTGTGTGTGAATCAAATG
TTAGGGTGGGCTATATAGCAATTAATTATGGGTCAGGAAGCTTGATATAA
CCCTACCCTACCACAAATTGTATTGTCACTGTTCTTGACTCCATACTGAT
ATATATATATATATCATCAGTTTTTGTTGAATAGACCAGCTGCTTAAATT
TAAACCCAGAGAATTAATGATAGAACTTAGCTAGAAGTTTCCCTTCTGCT
GGTTGAATTTCTTCATGTCCAAAATAGATATGCAGCCTTGTTAAAGAGAA
TTGCCTCAGAGAATCTTGCTCATTTAGGAATCTTTTGGGCTAAACTTACA
ACTTTTTTGGCCGAATGTGCCCATCGGTTATATAAATTTTAAAGTTTTTT
ATGGGTGTCTACCCATTATTTTTGGGAGGAAATTTTTTTTCTAACAATTT
TGGGTTAAGGGTTTTTGTATATTAATGGTTTCTTACAAAGTGTCAAAAAG
GGGGTGTTTTATTATTGTTTGTTTTTTAAAAGCAAA
CCCGTTCTTTTTTNNNCCGAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAAGCTCCCCGAAANNGA
ANGGNNGAGAAGNANNCCCCTTAAAATTCCCCNNNNNAANNANNAGGGAA
AGGNAAANNAAAANAANCCTAAGATTCCACCTCACACCAGNCAGAAGGGC
NAAGAACAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGTTTATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTTTTTTTTTCACATGCTCCACTATGNTCATAGCAGCCTTATTTATAATA
GCCAGAATTTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACA
ATTTCCTAAACACATGAAAGTCAAGAAAAATGAAGACTGAAGTGTGGACA
CTATGCCCCTCCTTAGAAGTGTTAACAAAACACCCTTGGAAGGAGTTACA
GAGACAAAGTTTGGAGCTGAGATTAAAGGGTGGCCCATGTAGAGAATGCC
TTTTCCAGGGATCCACCCCATAATCAGCATTCAAACGCTGACACCATTGC
ATACACTAGCAAGAATTTATCGAAAGGAACCAGATGTAGCTGTCTCTTGT
GAAACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCCCACAGTCCGC
TTAAGAATGAATCAAGGGTTCCCAAAGAAGGAGTTGAAGAAAGTCCCCAG
GGATTAAAGGAATCTGAACCCCTATAGGGGGATTACTTATGAAATAAACC
GTACCCGGGAAGTCTTGGACCTAGCGGGTAAAGAATAAAAAAAGGCGTCA
TTGGCTCTTATTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_b11.b1 MSMg01no062_b11.b1 CHROMAT_FILE:
MSMg01no062_b11.b1 PHD_FILE: MSMg01no062_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:19 2005
         (662 letters)



>mm_chr14_83088429_83089490
          Length = 1062

 Score = 1203 bits (622), Expect = 0.0
 Identities = 652/666 (97%), Gaps = 8/666 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaatcacaaatgtggagggaagaagtgacttgagagggaaagtagggggaagggaga 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 201 aaacaatcacaaatgtggagggaggaagtgacttgagagggaaagtaggggggagggaga 260

                                                                       
Query: 61  ggggaacctgatctagtattgggtgagggaaaagggctgaaacatcaggttttcatagtc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ggggaacctgatctagtattgggtgagggaaaagtgctgaaacatcaggttttcatagtc 320

                                                                       
Query: 121 tcatagcaaacacccttacttattgaggctttttctgttccagtgatgtttaaacttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatagcaaacacccttacttattgaggctttttctgttccagtgatgtttaaacttagt 380

                                                                       
Query: 181 tttgaataagacaggattcaggatgaccatgaagtagcatttctggaaagatctataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgaataagacaggattcaggatgaccatgaagtagcatttctggaaagatctataata 440

                                                                       
Query: 241 gaaatgttagattgggttaagaaacataggcagatcc----tttttaatataagtgaaca 296
           |||||||||||||||||||| ||||||||||||||||    |    ||||||||||||||
Sbjct: 441 gaaatgttagattgggttaacaaacataggcagatccaggct----aatataagtgaaca 496

                                                                       
Query: 297 aacaatcccttagactgttatcaaaaatgaaccccatttcctgtaatttgcttttgtaag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aacaatcccttagactgttatcaaaaatgaaccccatttcctgtaatttgcttttgtaag 556

                                                                       
Query: 357 gccttttgtcagagcaattaaaacattgtttaaaatatgatgtactaactgtgatcctgc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gccttttgtcagagcaattaaaacattgtttaaaatatgatgtactaactgtgatcctgc 616

                                                                       
Query: 417 ttaacaatggcaaaaactattttataatgtattccaaaattggaaaaatcatccagaagg 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 617 ttaacaatggcaaaaactattttataatgtattccaaaattggaaaaatcatccagaaag 676

                                                                       
Query: 477 cagatgaaataattattacagagtctcaaagtttgtaccaaatggaaatgagaaaagcca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cagatgaaataattattacagagtctcaaagtttgtaccaaatggaaatgagaaaagcca 736

                                                                       
Query: 537 ctttcaagacgtatgaaattactgtgtgtgaatcaaatgttagggtgggctatatagcaa 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctttcaagacgtatgaaattactgtgtgtgaatcaaatgttagggtgggctatatagcaa 796

                                                                       
Query: 597 ttaattatgggtcaggaagcttgatataaccctaccctaccacaaattgtattgtcactg 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 797 ttaattatgggtcaggaagcttgatataaccctaccctaccacaaattgtattgtcattg 856

                 
Query: 657 ttcttg 662
           ||||||
Sbjct: 857 ttcttg 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)