BAC Information

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BAC

Clone NameMSMg01-062C08
Chromosome14 (Build37)
Map Location 113,792,811 - 113,793,560
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509, Tpm3-rs7
Downstream geneLOC100043510, LOC382947, LOC668791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062C08.T7 (MSMg01no062_c08.b1)MSMg01-062C08.TJ (MSMg01no062_c08.g1)
ACCAG288189AG288190
length1,2021,192
length of high quality
(start - end)		738 (88 - 825)709 (87 - 795)
definitionCHROMAT_FILE: MSMg01no062_c08.b1 PHD_FILE: MSMg01no062_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:26 2005CHROMAT_FILE: MSMg01no062_c08.g1 PHD_FILE: MSMg01no062_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTTGTTTNNNNAACATTCGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCCTTGCTGATTATCTGCCCTTATAAATGAACAGAAAGAT
CATTGAATGAACTTTTAACCCTGATCTTCTTAAGTTCACATGATGAAGAT
GAGGTGTGTAATAAAGATCTTTGTTTTCTTCAACTCTGAATACATAAGAA
TCATCTGGAAGCTTTGTTATAGCAAGCTTCCCTAGATCCCACTGCCCATA
GCTTTAACTCAGCTGGGCTATTACATTTCTAATAAATTCCCAGATGATGT
TTTCAGACAGCAAGCCTTTCTTTTCCACGAGAGAGGTGCATCTCATGGTA
GTGTATATTATTCTCTTGTTCCATCACATTAAAATGATATCAAACTGAAA
AGAAATCAGTAACTCTACATTGGAAGATGACATGTTATTCAACTTAAATT
ATGCTGGAAAAATAAAGCCAAGTTCCCTTTCCTGATAGCCACCATGCATA
TCTTGTGGTATGTGTGTGAACATATACATATGTATATATATATATATATA
TATATAATACATATTTCTACCATCATAAATATATAAAATAATTCATAGAG
AGAATAAATACATGTAAAAGTTCACATATTTAATAACTGGTGTGAGATGA
TTATAGATTACATAGTCACAGTTATTTATTTATAGTGTTGTTCCATTTTG
CTTGGGAGTTACTCAAATATACATTATTTAATTTCTGTGTTTGTATTAAA
AGTTAATAGATAACTATGTACGAAACCAGCAACACATTTTTCAAATATTT
CACAGTCCTATGACTGTGATGAAACCTTAATTTGGTACTTGTAGCTTTCA
CAATTGCAAAAACTATAAGTTTTCACTGATTTTGGTCCTTGTTTTTGCTA
ATTAGATGTGATAGTTCTACAGAACTAATATAATGCTTCAGGAAGAACTG
TGACACTGGTAATACCTGGATTAAAGTCAAGTCCCCCATAACACTTTTTA
AAAATTTTGGGGAGAATTGTGGAGAAATATAAACTGTTGTTTTCAAATTC
CTAATTTAACATGGTTTCCTTTTTTACAAATAATCCCCCTAAATTTTTTT
TGTTGGTAATCAGATTTTTGGTATCCCCGGTTTGTGATTTTAATTCAACT
CTTTTTTGCAAAAAAACATTTTTTTTCGTGGTTTTACACTCTTTTTCCCC
CC

CCGTTCTATTTTTTAAGATGGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATGTTTAGCTCTTTTCCCCA
CTTTTAATAGGGTTACCTGGTTTTCTGGAGTCTAACTTCTTGAATTCTTT
GTATATGTTGGTTATTAGCCCTCTATTGAATGTAGGGTTGGTAAAGATCT
TCTCCCAATCTGTTGGTTGCTTTTTTGTCCTATTGACAGTGTCCTTTGCC
TTAAGAAGCTTTGTAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTT
ATAGCAACAAGCTATTGGTTTTCTGTTAAAGAAAATTTTCTCTGTGCTCA
TGTGTTTGAGACTCTTCCCCACTTTCTTTTCTATTACTTTCAGTATATCT
GTTTTTATGTGGAGGTACTTGAAACACTTGGACTTGAGCAAGAAATATAA
ATAAAAGAAATATCAAATAAAAAAATAAATTAATTAAATAAATTATGTGG
GTCATAAAAACATAACAAAAGTTCAAGGACGGCCTGGTCTACAGAGTGAG
TTCCTGGACCCTTTCTTGAAGAAAACCAGAAAAGAAAAGAAAAGAAAAGA
AAAGAAAAGAAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGAGGAGGTTAGG
GTAGTTTATTTTTTTTTNNTTTTTTTTTTTTTAATTTATTTTTTTTTTTA
TTTTTATTTTTTTTTTTTTTTTTTTTTATTATATTATTTTTTTTTTATTT
TTTTTTTATTTATTTATTTTTTTTTATTTTTTATTTTTTTATTATATTTT
ATTTAATAATTATTTTTTTTTTTTATATTTTTTTTTTATATTTTTATATT
TTTTTTATTTTTTTTTATTTTTTTGTTTTTTTTTTTTTATTTTTTTTATT
TTATTATTTTTAATTTTTATTTTTTTTTTATATTTATTTATTTATTGTTG
ATTTTTTTATTTTTTTTTTATTATTATATTATTATATTTTATAATTTTAT
TTTTTATTATATTTTATTTTTATTTTATATTTTTANTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_c08.b1 MSMg01no062_c08.b1 CHROMAT_FILE:
MSMg01no062_c08.b1 PHD_FILE: MSMg01no062_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:26 2005
         (738 letters)



>mm_chr14_113792623_113793760
          Length = 1138

 Score = 1301 bits (673), Expect = 0.0
 Identities = 726/751 (96%), Gaps = 14/751 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaacagaaagatcattgaatgaacttttaaccctgatcttcttaagttcacatgatgaa 60
           ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 189 tgaacagaaagatcattgaatgaacttttaacaatgatcttcttaagttca-atgatgaa 247

                                                                       
Query: 61  gatgaggtgtgtaataaagatctttgttttcttcaactctgaatacataagaatcatctg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gatgaggtgtgtaataaagatttttgttttcttcaactctgaatacataagaatcatctg 307

                                                                       
Query: 121 gaagctttgttatagcaagcttccctagatcccactgcccatagctttaactcagctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 308 gaagctttgttatagcaagcttccctagatcccactgcccatagctttaactcaggtggg 367

                                                                       
Query: 181 ctattacatttctaataaattcccagatgatgttttcagacagcaagcctttcttttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctattacatttctaataaattcccagatgatgttttcagacagcaagcctttcttttcca 427

                                                                       
Query: 241 cgagagaggtgcatctcatggtagtgtatattattctcttgttccatcacattaaaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 428 cgagagaggtgcatctcatggtagtgtatattattctcttgttccataacattaaaatga 487

                                                                       
Query: 301 tatcaaactgaaaagaaatcagtaactctacattggaagatgacatgttattcaacttaa 360
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 488 tatcaaactgaaaagaactcagtaactctacattggaagatgacatattattcaacttaa 547

                                                                       
Query: 361 attatgctggaaaaataaagccaagttccctttcctgatagccaccatgcatatcttgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 attatgctggaaaaataaagccaagttccctttcctgatagccaccatgcatatcttgtg 607

                                                                       
Query: 421 gtatgtgtgtgaacatatacatatgtat-----------atatatatat--atatatata 467
           ||||||||||||||||||||||||||||           ||||||||||  |||||||||
Sbjct: 608 gtatgtgtgtgaacatatacatatgtattatatatatgtatatatatatgtatatatata 667

                                                                       
Query: 468 taatacatatttctaccatcataaatatataaaataattcatagagagaataaatacatg 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 taatacatatttctaccatcataaatatataaaataattcatagagagaataaatacatg 727

                                                                       
Query: 528 taaaagttcacatatttaataactggtgtgagatgattatagattacatagtcacagtta 587
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 728 taaaagttcacatatttaataactggtgtaagatgattatagattacatagtcacagtta 787

                                                                       
Query: 588 tttatttatagtgttgttccattttgcttgggagttactcaaatatacattatttaattt 647
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ttaatttatagtgttgttccattttgcttgggagttactcaaatatacattatttaattt 847

                                                                       
Query: 648 ctgtgtttgtattaaaagttaatagataactatgtacgaaaccagcaacacatttttcaa 707
           ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 848 ctgtgtttgtattaaaagttaatagataactttgtacgaaaccagcaacatatttttcaa 907

                                          
Query: 708 atatttcacagtcctatgactgtgatgaaac 738
           |||||||||||||||||||||||||||||||
Sbjct: 908 atatttcacagtcctatgactgtgatgaaac 938


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 738
Length of database: 1138
Length adjustment: 10
Effective length of query: 728
Effective length of database: 1128
Effective search space:   821184
Effective search space used:   821184
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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