BAC Information

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BAC

Clone NameMSMg01-062G18
Chromosome14 (Build37)
Map Location 68,826,119 - 68,990,076
singlet/doubletdoublet
Overlap genenone
Upstream geneEbf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062G18.T7 (MSMg01no062_g18.b1)MSMg01-062G18.TJ (MSMg01no062_g18.g1)
ACCAG288400AG288401
length1,2411,218
length of high quality
(start - end)		632 (83 - 714)259 (138 - 396)
definitionCHROMAT_FILE: MSMg01no062_g18.b1 PHD_FILE: MSMg01no062_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:00 2005CHROMAT_FILE: MSMg01no062_g18.g1 PHD_FILE: MSMg01no062_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,989,614 - 68,990,076)(68,826,119 - 68,826,377)
sequence
ATCTCTNTNNNGACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCTTAGGTGGTCTCATCCCATTATTCATTTATGCAAACCTAGAT
GGGATGCTCTATTGCGCAAAGGCTACAAAGCTCCCCAGCATGGCATTGTA
TAGAACTCTGTAGGCAATTGTAACCCAATGGAAAATAAGCATATCTACAA
ATAAAAACATGCAGTAAAAATATTAAGTAAGGAAGAGGGACTATTTAGTT
CAGTTATAATCAGCCAAGTATGTTATGTATTAATAAGCATGGTGATGTAT
TTTTATTAAATTTTGTTAACTCAAATTATATTTTCGTTAATTTTTTCCTT
TTTCTTCTTCTTTTCACTTTTTTCTGTTCATTTCATTGCTTTTCCTTTTT
TTTCCTCTGTGTGTGTGCATGAATGTGTGTGTGTATGTGCATGTGTATGT
GCCTGTACACATGAACATGCGTGCCATGCATGTCGAAGCTAAAGGACATC
TCGATGTTGTTCCTCAGATGTCAACCACCATTTTAATAAAAAACAAAACA
AAGGAAAATACAGGGTGTCATCTTGGCTTGGGTTGTCAAGTAGTCTAGAC
TGGATAGCTACGAAGTCCCAAAAGTGCTGAGATTACAGGCAACACAACAC
CTGTCTTAAAAAAAAAATCAACAGAGATTCTGAGAAGCAAACTCAAGTAC
TGTAGCTTACAACATAAGAACTTTACTGACTGATCCATCTTCCTAGCCCT
TGATTTTGGATATCTATTATAAGTGATTTAAGTAAATGATTTTCTTCTAA
ACTCTGTAAAGACCTAAAATAATTGATCGATACACTCATAAGCTGCTACC
CAGGTAATTTATTGTGCCTAAAGTATCTAATCCTTACATGCATACTCCAT
ACCCATTGTTTACACACATACTCTTATTCATTTTTTTTTCTTTCTCATAT
TTTATTTATATCTTTCATTTTTTTTATCTCAAAAATTCTCCTATAGCCTC
TCCCACTCTTTTTATAAAAAATACTTTTGTTGTTGTTTTAAAAAAAATCC
CAATTTTGTCTTGGGTTTAGGTTTAGTTAAACTACCCCTCCTCCGGTTTT
TCGAATATCCCCTTCTTGTGTATTCTAAATTTTTATCTCCTTCTTCTCTG
TTGTTATTTTTTCTTACTATTTCTAAAATATAATTTTCCTTCCATGTTCC
TCTTATATAAAGTATCTGTATTTCTTTTTTTATTTCTATTT

TTTTTTTACGATCGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACATTTAAAAGATGCCTTAAGAAAATCATT
TAAACCATTTCCACCTTCTCTATTTTCATTTTCCTCTTATATACTTGATT
TAACCGGGATCGATTTCTTTGCAGTTTAAAATTTAGGACTAATATTTGAT
CCATCAATCAAACGTTGTTAGTCTGGCTTCCTGCCACCTTCAGTTTCCTT
GGCTGTCTTGTAAGTTCAGTCATCGCTGGGTAATTTCTATGACAAAGAAT
TTATCCTAGATACATTGTGATTCTTTTGAAAATACAAGCATTAGCAGTTA
ACATCTTTATTTTATATTTACTTTTCTAGTAATATTCACTGAACTATATT
TTGAATTGACATATATATGTATTAGTTATAATTGTTATATATTAAGCTTG
GGGGATATTTGTGGTAAAAAAGGTATAGGAAAAACATATACACCAAGAGT
GACTAGAGGGTCTAGCAGAGTGTGGAAGGAAGAATGAGACGGTGGGAGGA
GAGGAAGAGGAGAGATAAAGAGGTTTTATATATTTTCGTTTGTTCGTGCA
TGTCCACTTTTTGTCTTGTTTTTTGTTTGTTCTATTTTTTTTATTTTCTT
GTTCTTCGTTTTTCTTTTCTCTTTTGCTTGATTTATTTTTATTTGTTTTA
TTTTATTATATTTTCTTTTCTTTTTTTCTCTTATTTTTCTCTCCTTTTTT
TTCTTCCCTTCCTTTTCTTTTTTTTCCTCTCTCTCTTTCTGTTATTATTT
TTTATTTTTCTTTTCTTTTTTTAATCATATTTTTTTTTTTCTTTCTATTC
TCTTTCTCCTTTTTTCTTTTTTTCTTTTTTTATTCTTTTTTTCCTATTTT
TCTTCCTTTCTTTCTTTCTTTTTTTTTTTTCTTTCTTTTTTCTTTTTTAT
TCCTTTTTTTTTTACTCTCCTCTTCTTTTTTTTTTTTTATTTTTTTTTTC
ATTTTTTTTCATTTTTTTCTNTTTTTTTCTTTTTCTTCCTTTCTTTTCTT
CTTTTTTTTTTTCTTTCTTTCTTTTCCTTCTTCCTTCTTCCTTCTTCTTT
TTTCTTCTTTCTTCTTCTCTCTTTTTTTTCTTTTTCTTTTTTCTCTCCTC
TTTTTTTTCTCTTCTTCTTTTTTTCTTCTTTCTTCTTTCTTCTCTCTCTT
CTTTTTCTTTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_g18.b1 MSMg01no062_g18.b1 CHROMAT_FILE:
MSMg01no062_g18.b1 PHD_FILE: MSMg01no062_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:00 2005
         (632 letters)



>mm_chr14_68989045_68990076
          Length = 1032

 Score =  895 bits (463), Expect = 0.0
 Identities = 463/463 (100%)
 Strand = Plus / Minus

                                                                        
Query: 170  agttataatcagccaagtatgttatgtattaataagcatggtgatgtatttttattaaat 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 agttataatcagccaagtatgttatgtattaataagcatggtgatgtatttttattaaat 973

                                                                        
Query: 230  tttgttaactcaaattatattttcgttaattttttcctttttcttcttcttttcactttt 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  tttgttaactcaaattatattttcgttaattttttcctttttcttcttcttttcactttt 913

                                                                        
Query: 290  ttctgttcatttcattgcttttccttttttttcctctgtgtgtgtgcatgaatgtgtgtg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  ttctgttcatttcattgcttttccttttttttcctctgtgtgtgtgcatgaatgtgtgtg 853

                                                                        
Query: 350  tgtatgtgcatgtgtatgtgcctgtacacatgaacatgcgtgccatgcatgtcgaagcta 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  tgtatgtgcatgtgtatgtgcctgtacacatgaacatgcgtgccatgcatgtcgaagcta 793

                                                                        
Query: 410  aaggacatctcgatgttgttcctcagatgtcaaccaccattttaataaaaaacaaaacaa 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  aaggacatctcgatgttgttcctcagatgtcaaccaccattttaataaaaaacaaaacaa 733

                                                                        
Query: 470  aggaaaatacagggtgtcatcttggcttgggttgtcaagtagtctagactggatagctac 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  aggaaaatacagggtgtcatcttggcttgggttgtcaagtagtctagactggatagctac 673

                                                                        
Query: 530  gaagtcccaaaagtgctgagattacaggcaacacaacacctgtcttaaaaaaaaaatcaa 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  gaagtcccaaaagtgctgagattacaggcaacacaacacctgtcttaaaaaaaaaatcaa 613

                                                       
Query: 590  cagagattctgagaagcaaactcaagtactgtagcttacaaca 632
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612  cagagattctgagaagcaaactcaagtactgtagcttacaaca 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no062_g18.g1 MSMg01no062_g18.g1 CHROMAT_FILE:
MSMg01no062_g18.g1 PHD_FILE: MSMg01no062_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:00 2005
         (259 letters)



>mm_chr14_68825919_68826577
          Length = 659

 Score =  501 bits (259), Expect = e-146
 Identities = 259/259 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatacttgatttaaccgggatcgatttctttgcagtttaaaatttaggactaatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatacttgatttaaccgggatcgatttctttgcagtttaaaatttaggactaatattt 260

                                                                       
Query: 61  gatccatcaatcaaacgttgttagtctggcttcctgccaccttcagtttccttggctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatccatcaatcaaacgttgttagtctggcttcctgccaccttcagtttccttggctgtc 320

                                                                       
Query: 121 ttgtaagttcagtcatcgctgggtaatttctatgacaaagaatttatcctagatacattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaagttcagtcatcgctgggtaatttctatgacaaagaatttatcctagatacattg 380

                                                                       
Query: 181 tgattcttttgaaaatacaagcattagcagttaacatctttattttatatttacttttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattcttttgaaaatacaagcattagcagttaacatctttattttatatttacttttct 440

                              
Query: 241 agtaatattcactgaacta 259
           |||||||||||||||||||
Sbjct: 441 agtaatattcactgaacta 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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