Query= MSMg01no062_j08.b1 MSMg01no062_j08.b1 CHROMAT_FILE:
MSMg01no062_j08.b1 PHD_FILE: MSMg01no062_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:19 2005
(637 letters)
>mm_chr14_40275269_40276306
Length = 1038
Score = 1181 bits (611), Expect = 0.0
Identities = 632/639 (98%), Gaps = 3/639 (0%)
Strand = Plus / Minus
Query: 1 ttataattatggacagatagattaaatattct-aaaaaaaaccaatgaattaattgtggt 59
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 838 ttataattatggacagatagattaaatattctaaaaaaaaaccaatgaattaattgtggt 779
Query: 60 ttgtattaaaagtaggtagattatattgaaactgtttcatgtagcttaaattttttcttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttgtattaaaagtaggtagattatattgaaactgtttcatgtagcttaaattttttcttt 719
Query: 120 aaatgcccatggaagaagttgagcagattaaaagtagaatatatttgtatgtgcttgaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aaatgcccatggaagaagttgagcagattaaaagtagaatatatttgtatgtgcttgaga 659
Query: 180 aatcagtacctgtattttcaaggaagacagtgggtacagggtcaaagaaaagacttgaac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aatcagtacctgtattttcaaggaagacagtgggtacagggtcaaagaaaagacttgaac 599
Query: 240 tctaacaagtatttagtatttctatgcttcttatatctatatacacatatacatatattt 299
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 598 tctaacaagtatctagtatttctatgcttcatatatctatatacacatatacatatattt 539
Query: 300 aagtaaaattaatacagaaagtaaatatttatttacataatggtgatgttatgaggctat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aagtaaaattaatacagaaagtaaatatttatttacataatggtgatgttatgaggctat 479
Query: 360 tagattgggattttaaaaatcttaaggatgttagaacacatttattatttaatattcatc 419
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 478 tagattgggattttaaaaatcttaagaatgttaggacacatttattatttaatattcatc 419
Query: 420 taaaacttatggtagaaaattaaataagatgccaattaca-taagcattatagatttaaa 478
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 418 taaaacttatggtagaaaattaaataagatgccaatta-agtaagcattatagatttaaa 360
Query: 479 gataagtttaatattaagttaccaaattaaaattgttagtgttattttaagtgttagtgg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gataagtttaatattaagttaccaaattaaaattgttagtgttattttaagtgttagtgg 300
Query: 539 ttatttctggattattaaatgagactcaacttattatacttttctataatattttctgta 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttatttctggattattaaatgagactcaacttattatacttttctataatattttctgta 240
Query: 599 gtttagttaatggtgtgtggtatttctgtaatcacaaga 637
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gtttagttaatggtgtgtggtatttctgtaatcacaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space: 644556
Effective search space used: 644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_j08.g1 MSMg01no062_j08.g1 CHROMAT_FILE:
MSMg01no062_j08.g1 PHD_FILE: MSMg01no062_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:20 2005
(706 letters)
>mm_chr14_40107301_40108406
Length = 1106
Score = 1286 bits (665), Expect = 0.0
Identities = 686/693 (98%)
Strand = Plus / Plus
Query: 1 aactccagagagaatttccttctgacctccacctgagcactgtggctagaatgcttggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactccagagagaatttccttctgacctccacctgagcactgtggctagaatgcttggac 260
Query: 61 ataaacaacaataataaataattcaactgcttgtagagtaagaaagaaagacgcaggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaacaacaataataaataattcaactgcttgtagagtaagaaagaaagacgcaggagt 320
Query: 121 tcaaaatatggcttgattgataggaacgctgactgctcttgcagaagacttgtttctatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaatatggcttgattgataggaacgctgactgctcttgcagaagacttgtttctatt 380
Query: 181 ttcaacattcacgtggtgactcatctatatcttcagttccagtggatctgatagtttact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaacattcacgtggtgactcatctatatcttcagttccagtggatctgatagtttact 440
Query: 241 ctggcctcttcaagtaccaaggatggaaaggagaactcttacatgaattaaaaacaccct 300
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 441 ctggcctcttcaagtaccaaggatggaaaggagaacacatacatgaattaaaaacaccct 500
Query: 301 cccacacatacatacatagaaattaaacaataacagcttgagtttaacaatttatagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccacacatacatacatagaaattaaacaataacagcttgagtttaacaatttatagaat 560
Query: 361 ggcaaatgtaggaccttaacaatgatagataactcaggctggcatgatatgaagttaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcaaatgtaggaccttaacaatgatagataactcaggctggcatgatatgaagttaaac 620
Query: 421 tccttccaatttaatttttccaaaactgacatggattaaaatatgagagttaggaaaagc 480
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 tccttccaatttcatttttccaaaactgacatggattaaaataccagagttaggaaaagc 680
Query: 481 taaatccaccaatctgcacagaccaagcttccttagcttagtctctgtggaaggatgctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatccaccaatctgcacagaccaagcttccttagcttagtctctgtggaaggatgctg 740
Query: 541 ggaagacatcctgtgttaatttcccttctttcacataccatgtactaatatagatgggcc 600
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaagacatcctgtgttaatttcacttctttcacataccatgtactaatatagatgggca 800
Query: 601 aatgtaaacatttttctaatcaaaaggcaaccaataagtcttctaagagagtactagtct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatgtaaacatttttctaatcaaaaggcaaccaataagtcttctaagagagtactagtct 860
Query: 661 tactatccatcctgataccaggaaattcaggta 693
|||||||||||||||||||||||||||||||||
Sbjct: 861 tactatccatcctgataccaggaaattcaggta 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
