BAC Information

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BAC

Clone NameMSMg01-062J20
Chromosome14 (Build37)
Map Location 99,169,469 - 99,318,316
singlet/doubletdoublet
Overlap genenone
Upstream geneDach1, LOC635593, LOC619716
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062J20.T7 (MSMg01no062_j20.b1)MSMg01-062J20.TJ (MSMg01no062_j20.g1)
ACCAG288548AG288549
length1,1621,185
length of high quality
(start - end)		758 (91 - 848)453 (89 - 541)
definitionCHROMAT_FILE: MSMg01no062_j20.b1 PHD_FILE: MSMg01no062_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:23 2005CHROMAT_FILE: MSMg01no062_j20.g1 PHD_FILE: MSMg01no062_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,317,559 - 99,318,316)(99,169,469 - 99,169,921)
sequence
NCCATTTGTTNNNNAATCATTCGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTGGACTGCATCACCTTTAAAATCTAGATTAAGGAA
AGTTAACGTAATCTTTTTCTGTAAACAAAAATCAATCACCTGTCAGCTTT
GTAGTATTATAAATGTATTTAGTCAGCATAGGATTTTTTCCAGCAGTGTT
GTCTGCAGATTGAAATTGACTAACCAGATGTTAAATATTAAATAGAACTA
ATCAGAGCATGGTTCAGGAGGCTTTAAAAACAATGATCAAAGGGAGCTAT
TTATTACCTGATGTATGTTTCTGCTGAAATATCAGCTCTGTAATATTATA
TTTAAACTTAGTTTTTTTCCCCCAAGATTACATTTTTTTAGCTTTATATG
AACAATAATTACTGTTAACAAATTAAGTTAACAAATTAACCAGGTAACCG
AATTATTGTACATCATCATGGCTTGAAACTTGACCAAAAAAATATAAAGC
TCAATTCATAGACATAAAGCCTTAGTGTGATGTTTAGTATGCATATAAAA
TTCTCAATAATAATACAAGTACAGGCCTGTGTTGCTTAATGAAGAGGAAA
CATTTTGTGAAGTGTGTCTTGAGGCAACCAAGTTGTTATGTGAACACCAT
TGAGCGTACTTAAATAAACCCAAGCCATATAGCTTTCTGCATACCAGGGC
TACAACTATGGCATAGTCTTTTGCTCTGGTTTTAGGGCTGGATGAACAAC
ACAACAGAGCTGAAATCCAGCACAAGAGAAAATGATGTAGTCAGGAGATT
TGGCAAACAGGTACCTGAGGCTGCTCACAACTGATGTGCTCTAAAATCAG
GGTAAAAATGTAATACATACATGAGCCAGCGGGTGAGAGCCATTCATTAA
TGGTTATTGACTATGTATGTGTATATGTATGTAAAAGTAGTGCATATGGT
GTCTGCTATTCTTGGNTGTTCATGGCAGGGTGCTGTCTGTCTGTTGAAAA
GGATCATCTCCATCCCTGTGAAAAAAAACAGCACGGGGATGCAAGAAGGG
TTGTGGGTATCCTTTAACCCCTGCCAAATTTCTCCGGTTCCCAAAAATCT
TTTGTCGAACCCCTTTTGGAAACAGAAATCCTTTGTTTAACGTCAACATT
TGTTTAACTAGG

CATCTTTTTNNNNNACCAGGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATTTAAAACAAGATCATGATGTAT
ATATGATTTGTTTTTTACTTAATTCCAACTCCTTCCATCTGATTTGGTAT
CTGGCAAAAGCCTGCATAGATCAATCTGTTATCTATCTATCTGTCTGTCT
GTCTGTCTATCTATCTATCTATATATCTATCATCTATCTATTTATCCATG
CATCATCTATCTAGTCTCTAGACAGAGACAAAAAAATTACTGAATCTGGA
AAAGGGACTTATTCTGAGGCTGGAAAGTCAACCTGCTTTGTATCTTTGTA
ATTTTTTTTTAGTTTTAAGTTATAACAAAATTAAATACTAAGTCTCATAA
TTATAAAGATGAAAAGCATACGGGGGGTATTCCCAGTAAAGGTTCCTACT
CACAATGTGAGAGGCCCTGGCTTGGACTCTTGCACCAGAGCAAGAAAAGT
AAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAATAAGAAGAATAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATAGTATTCTTTCTTTTTT
TTTTCTTTTTATTTTTTCTTTTTTTTCTCTTTATTTTTTTCTTTTCTTTA
TTTTTTTTTATTTTTTTTCTCTTTTCTTTTTTTCTTTTTTTTAATCCTCT
TTTTTTTTCATTTTTTTCTCTCTCCTCTTTTTTCTTACTTCTTTTTATCC
TTTTTTTTTCTTTTTTTCTTTCCCTTTTTATTTTTTATTTTTTCTTTTTT
TCTATTTTTTCTTCTTCTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTCT
TCTTTTCTTCTTCTTTCTTTCTTTCTTTTATTTCCTTCTTCTTTTTTTTT
TCTTTTTTTTACCCTTTTTTTTTTTTTCCTTTCTTTCCTTTTTTTTTCCA
TTTTCTTTTCCTTCATCTTCTTTTCTTCTTAATTCTTTTTTCTCTATTAT
TTCTTTTTTTTCTCTTTTCTCTATTTTTTTCTTTTTTCCTTCTACTTTTC
TCTTTTTCTTTCTATCTTTTTCTTTTTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_j20.b1 MSMg01no062_j20.b1 CHROMAT_FILE:
MSMg01no062_j20.b1 PHD_FILE: MSMg01no062_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:23 2005
         (758 letters)



>mm_chr14_99317359_99318516
          Length = 1158

 Score = 1427 bits (738), Expect = 0.0
 Identities = 753/758 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattaaggaaagttaacgtaatctttttctgtaaacaaaaatcaatcacctgtcagcttt 60
           |||||||||||||||||||||||||||| ||  ||||||||||||| || ||||||||||
Sbjct: 958 gattaaggaaagttaacgtaatctttttatgggaacaaaaatcaattacatgtcagcttt 899

                                                                       
Query: 61  gtagtattataaatgtatttagtcagcataggattttttccagcagtgttgtctgcagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gtagtattataaatgtatttagtcagcataggattttttccagcagtgttgtctgcagat 839

                                                                       
Query: 121 tgaaattgactaaccagatgttaaatattaaatagaactaatcagagcatggttcaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgaaattgactaaccagatgttaaatattaaatagaactaatcagagcatggttcaggag 779

                                                                       
Query: 181 gctttaaaaacaatgatcaaagggagctatttattacctgatgtatgtttctgctgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gctttaaaaacaatgatcaaagggagctatttattacctgatgtatgtttctgctgaaat 719

                                                                       
Query: 241 atcagctctgtaatattatatttaaacttagtttttttcccccaagattacattttttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atcagctctgtaatattatatttaaacttagtttttttcccccaagattacattttttta 659

                                                                       
Query: 301 gctttatatgaacaataattactgttaacaaattaagttaacaaattaaccaggtaaccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gctttatatgaacaataattactgttaacaaattaagttaacaaattaaccaggtaaccg 599

                                                                       
Query: 361 aattattgtacatcatcatggcttgaaacttgaccaaaaaaatataaagctcaattcata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aattattgtacatcatcatggcttgaaacttgaccaaaaaaatataaagctcaattcata 539

                                                                       
Query: 421 gacataaagccttagtgtgatgtttagtatgcatataaaattctcaataataatacaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gacataaagccttagtgtgatgtttagtatgcatataaaattctcaataataatacaagt 479

                                                                       
Query: 481 acaggcctgtgttgcttaatgaagaggaaacattttgtgaagtgtgtcttgaggcaacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 acaggcctgtgttgcttaatgaagaggaaacattttgtgaagtgtgtcttgaggcaacca 419

                                                                       
Query: 541 agttgttatgtgaacaccattgagcgtacttaaataaacccaagccatatagctttctgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agttgttatgtgaacaccattgagcgtacttaaataaacccaagccatatagctttctgc 359

                                                                       
Query: 601 ataccagggctacaactatggcatagtcttttgctctggttttagggctggatgaacaac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ataccagggctacaactatggcatagtcttttgctctggttttagggctggatgaacaac 299

                                                                       
Query: 661 acaacagagctgaaatccagcacaagagaaaatgatgtagtcaggagatttggcaaacag 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acaacagagctgaaatccagcacaagagaaaatgatgtagtcaggagatttggcaaacag 239

                                                 
Query: 721 gtacctgaggctgctcacaactgatgtgctctaaaatc 758
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtacctgaggctgctcacaactgatgtgctctaaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 758
Length of database: 1158
Length adjustment: 10
Effective length of query: 748
Effective length of database: 1148
Effective search space:   858704
Effective search space used:   858704
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no062_j20.g1 MSMg01no062_j20.g1 CHROMAT_FILE:
MSMg01no062_j20.g1 PHD_FILE: MSMg01no062_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:23 2005
         (453 letters)



>mm_chr14_99169269_99170121
          Length = 853

 Score =  837 bits (433), Expect = 0.0
 Identities = 448/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatgatgtatatatgatttgttttttacttaattccaactccttccatctgatttggt 60
           |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||
Sbjct: 201 atcatgatgtatatatgatttgttttttacataattccaactccttatatctgatttggt 260

                                                                       
Query: 61  atctggcaaaagcctgcatagatcaatctgttatctatctatctgtctgtctgtctgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctggcaaaagcctgcatagatcaatctgttatctatctatctgtctgtctgtctgtct 320

                                                                       
Query: 121 atctatctatctatatatctatcatctatctatttatccatgcatcatctatctagtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctatctatctatatatctatcatctatctatttatccatgcatcatctatctagtctc 380

                                                                       
Query: 181 tagacagagacaaaaaaattactgaatctggaaaagggacttattctgaggctggaaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagacagagacaaaaaaattactgaatctggaaaagggacttattctgaggctggaaagt 440

                                                                       
Query: 241 caacctgctttgtatctttgtaatttttttttagttttaagttataacaaaattaaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacctgctttgtatctttgtaatttttttttagttttaagttataacaaaattaaatac 500

                                                                       
Query: 301 taagtctcataattataaagatgaaaagcatacggggggtattcccagtaaaggttccta 360
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagtctcagaactataaagatgaaaagcatacggggggtattcccagtaaaggttccta 560

                                                                       
Query: 361 ctcacaatgtgagaggccctggcttggactcttgcaccagagcaagaaaagtaaaaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcacaatgtgagaggccctggcttggactcttgcaccagagcaagaaaagtaaaaaaga 620

                                            
Query: 421 agaagaagaagaagaagaagaagaagaagaaga 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 agaagaagaagaagaagaagaagaagaagaaga 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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