Query= MSMg01no062_n12.b1 MSMg01no062_n12.b1 CHROMAT_FILE:
MSMg01no062_n12.b1 PHD_FILE: MSMg01no062_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:51 2005
(459 letters)
>mm_chr14_33486466_33487325
Length = 860
Score = 820 bits (424), Expect = 0.0
Identities = 451/460 (98%), Gaps = 1/460 (0%)
Strand = Plus / Minus
Query: 1 ctgaaatccgcattttaccagtcatctcagacttttatctgcttgttctgaccagcctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ctgaaatccgcattttaccagtcatctcagacttttatctgcttgttctgaccagcctag 601
Query: 61 gactgtcaggtctcctactgtgtcccctgctctgtgtggatcccagagtcacatggcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 600 gactgtcaggtctcctactgtgtcccctgctctgtgtggatcccagagtcacatgacctg 541
Query: 121 ggtgcctagcctagccctatcacccatcaactggaaggcacagaatgtctgcacggcctc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 540 ggtgcctagcctagccctatcacccatcaactggaaggcacagaatgtctgcactgcctc 481
Query: 181 tctgaggccctgatgtctcatcgcagaagtgacattgacaatgtgtatgagtgatgacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tctgaggccctgatgtctcatcgcagaagtgacattgacaatgtgtatgagtgatgacat 421
Query: 241 gcaagctgggaccccaacctgtattttcccatcaggactctgattggtgggacagttgta 300
||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 420 gcaagctgggaccccaacctggagtcacccatcaggactctgattggtgggacagttgta 361
Query: 301 ctcgtcattgtggggtgt-aaaaaagtggctggctgtaggtggaacttctggaactaaag 359
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctcgtcattgtggtgtgtaaaaaaagtggctggctgtaggtggaacttctggaactaaag 301
Query: 360 gtggacgcacacaagtctccacacctggtacctctggtgtttccatctggaaggcaggga 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 300 gtggacgcacacaagtctccacacctggcacctctggtgtttccatctggaaggcaggga 241
Query: 420 ggtcagggcatagctgaggctggactgtgtggccctctca 459
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggtcagggcatagctgaggctggactgtgtggccctctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 860
Length adjustment: 10
Effective length of query: 449
Effective length of database: 850
Effective search space: 381650
Effective search space used: 381650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_n12.g1 MSMg01no062_n12.g1 CHROMAT_FILE:
MSMg01no062_n12.g1 PHD_FILE: MSMg01no062_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:51 2005
(509 letters)
>mm_chr14_33326607_33327515
Length = 909
Score = 878 bits (454), Expect = 0.0
Identities = 487/498 (97%), Gaps = 2/498 (0%)
Strand = Plus / Plus
Query: 13 gagagta-tctgcgcctcgggctctccatgcggctgtggccccgcgccgtgggcgtctag 71
||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 213 gagagtact-tgcgcctcgggctctccatgaggctgtggccccgcgccgtgggcgtctag 271
Query: 72 ccttctgccgcggagcccgtccgagcgagccgcggcttcgcccgtgggccggatatcttc 131
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccttctgcggcggagcccgtccgagcgagccgcggcttcgcccgtgggccggatatcttc 331
Query: 132 cggcaggcgtacctgaaaccggaagtgacgtgtggcgccggctctcacctgagcggaggg 191
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cggcaggcgcacctgaaaccggaagtgacgtgtggcgccggctctcacctgagcggaggg 391
Query: 192 cacggggcagtgggggcgcggaccagccccttgcatttgcttctgggtttgtgaatgggg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cacggggcagtgggggcgcggaccagccccttgcatttgcttctgggtttgtgaatgggg 451
Query: 252 cccggcgtgcagggcctacagttttctgttgggtctggatgacgatgatggtgtccttga 311
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 452 cccggcgtgcagggcctacagggctctggtgggtctggatgacgatgatggtgtccttga 511
Query: 312 gagggagagtcagggtggtgcatacccggcgccttccgtaagatgcaaagttgagtggga 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gagggagagtcagggtggtgcatacccggcgccttccgtaagatgcaaagttgagtggga 571
Query: 372 gggacagagctgtaagtgctgtaacccggtacccctcgcggtgtcatcttcgccgctgtc 431
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 572 gggacagagctgtaagtgctgtaacccggtacccttcgcggtgtcatcttcaccgctgtc 631
Query: 432 cttctcttccgagccctctcgtctttttcctcctgacttcatcctattagcactgcactg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cttctcttccgagccctctcgtctttttcctcctgacttcatcctattagcactgcactg 691
Query: 492 ctatttctctgttatcca 509
||||||||||||||||||
Sbjct: 692 ctatttctctgttatcca 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
