XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTGT
CACTGTTGGGCAGCTCACAATTGTTTGTAACCCCCAAGGAACCCAGTACC
TCTCTTCTGGCCTCTGTGGGCATCCACACATGTGGCAGATACTCAAACAC
ACAAGCATATACATTTTCTTAGTACTTAAGACAGAAGCAACTTAATGTCT
TATATTTTAATTAAGATAAATGGCTAATAAAGAAATAAACAGGGCAAGAG
AATACTGAAAGGAAAAAAGTGAATAGTTGTTAAATCTCTGACAACTACAG
GATTTATTTATTTATTTATTTTTTACTTTATGGGTACAAGTGTTTTACTT
GTATCATGCATGTCCATGGACTACATGATGCTTGATGACCCAGCAGAAGG
ACCATCAGACCTCCTGGCACTAGAGTTAGACTGTGTGAGCTGTCATGTGA
ATACTGGGAACTAAACTCAGGTCCTCTGCATGAACAGAAAGTATTCTTAA
TTCCTCTCCAAACCCTGAATTAGTCACTTCTTAAACTAAAGAAACAAATT
CTAAGTGCAAACTAAGTATCAATATACAAATTGAAATACCAAGTCACAAA
GCGATGTTGGTGATAAAGAAAGACCCTCACAAAGAAATCTGCCATGAATA
CACATTCACAGAGAAGCAGAAGCTCATCTACGTTTTGTAAAACA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATATCCGTTTGCTAATTGAAATAGGCTTGTAAATTAGGAGGCGTGC
AAGCATGATCTCCCATTTCACACGTTTTTCTAATATAGAAAAGGAGAGAG
AATACCCCTAGCCCATGCAGCTGGGACCTCGGGTATAATAGCAACCAGCA
TTTCCCAATAGCCAGGGAGAAAGTCAAAGGAGGGAGTGGCTGGGGGTGGG
CAGGAGCTGGAGGAGGGTTGCATAGCTTGCTGTTTCAATCATCTAGAAAA
AGATTCATGGGGCTAGACCTCTCCATGAGAATTCAGTTACTCTTACTGAA
TTTCCATAGTGGCGATGTTGGAGATGTTTATACAGAGACCCAGAGCGAAA
CATTAGATGGAGCTGGGGAAGGCCTGTGGAAGAGTTGGGAGAAGGATTGA
GGGACTGGAAGAGGACAGGGACTCCACAGGAAGAGCAACAGAGACAACTA
ACCTGGACCCTTGGAAGCTCCCAGACACTGAAGGGCTAGACCTAGGCAAT
TATGTAGCACACATGTAGCAGATGTGCACCGTGATCTTCAGGAGTAAGGG
GTGCACAAAACTAAAGTGGGGGCTGTCACTGAATCTGTTGCCTGCCTGCG
GATCTTGTTCTCCTTATCTAGGCTACCTTGTCG

Query= MSMg01no063_j17.b1 MSMg01no063_j17.b1 CHROMAT_FILE:
MSMg01no063_j17.b1 PHD_FILE: MSMg01no063_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:02 2005
         (563 letters)



>mm_chr14_68443051_68444013
          Length = 963

 Score = 1065 bits (551), Expect = 0.0
 Identities = 560/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggcagctcacaattgtttgtaacccccaaggaacccagtacctctcttctggcctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttgggcagctcacaattgtttgtaacccccaaggaacccagtacctctcttctggtctct 260

                                                                       
Query: 61  gtgggcatccacacatgtggcagatactcaaacacacaagcatatacattttcttagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggcatccacacatgtggcagatactcaaacacacaagcatatacattttcttagtac 320

                                                                       
Query: 121 ttaagacagaagcaacttaatgtcttatattttaattaagataaatggctaataaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagacagaagcaacttaatgtcttatattttaattaagataaatggctaataaagaaa 380

                                                                       
Query: 181 taaacagggcaagagaatactgaaaggaaaaaagtgaatagttgttaaatctctgacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaacagggcaagagaatactgaaaggaaaaaagtgaatagttgttaaatctctgacaac 440

                                                                       
Query: 241 tacaggatttatttatttatttattttttactttatgggtacaagtgttttacttgtatc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 tacaggatttatttatttatttattttttactttatgggtacaagtgttttacttgcatc 500

                                                                       
Query: 301 atgcatgtccatggactacatgatgcttgatgacccagcagaaggaccatcagacctcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcatgtccatggactacatgatgcttgatgacccagcagaaggaccatcagacctcct 560

                                                                       
Query: 361 ggcactagagttagactgtgtgagctgtcatgtgaatactgggaactaaactcaggtcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcactagagttagactgtgtgagctgtcatgtgaatactgggaactaaactcaggtcct 620

                                                                       
Query: 421 ctgcatgaacagaaagtattcttaattcctctccaaaccctgaattagtcacttcttaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcatgaacagaaagtattcttaattcctctccaaaccctgaattagtcacttcttaaa 680

                                                                       
Query: 481 ctaaagaaacaaattctaagtgcaaactaagtatcaatatacaaattgaaataccaagtc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 ctaaagaaacaaattctaagtgcaaactaagtatcaatatacaaattgaaatacaaagtc 740

                                  
Query: 541 acaaagcgatgttggtgataaag 563
           |||||||||||||||||||||||
Sbjct: 741 acaaagcgatgttggtgataaag 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no063_j17.g1 MSMg01no063_j17.g1 CHROMAT_FILE:
MSMg01no063_j17.g1 PHD_FILE: MSMg01no063_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:02 2005
         (287 letters)



>mm_chr14_68592389_68593075
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatccgtttgctaattgaaataggcttgtaaattaggaggcgtgcaagcatgatctccc 60
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 487 atatcggtttgctaattgaaataggcttgtaaattaggaggcgtgtaagcatgatctccc 428

                                                                       
Query: 61  atttcacacgtttttctaatatagaaaaggagagagaatacccctagcccatgcagctgg 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 427 atttcacacgtttttctaatatagaaaaggagagagaataaccctagcccatgcagctgg 368

                                                                       
Query: 121 gacctcgggtataatagcaaccagcatttcccaatagccagggagaaagtcaaaggaggg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaccttgggtataatagcaaccagcatttcccaatagccagggagaaagtcaaaggaggg 308

                                                                       
Query: 181 agtggctgggggtgggcaggagctggaggagggttgcatagcttgctgtttcaatcatct 240
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 307 agtggctgggggtgggcaggagctggaggagagttgcatagcttgctatttcaatcatct 248

                                                          
Query: 241 agaaaaagattcatggggctagacctctccatgagaattcagttact 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agaaaaagattcatggggctagacctctccatgagaattcagttact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)