BAC Information

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BAC

Clone NameMSMg01-064K04
Chromosome14 (Build37)
Map Location 67,034,584 - 67,034,961
singlet/doubletsinglet
Overlap genenone
Upstream genePnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
Downstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064K04.T7 (MSMg01no064_k04.b1)MSMg01-064K04.TJ (MSMg01no064_k04.g1)
ACCAG290054AG290055
length1,1981,167
length of high quality
(start - end)
424 (31 - 454)379 (70 - 448)
definitionCHROMAT_FILE: MSMg01no064_k04.b1 PHD_FILE: MSMg01no064_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:42 2005CHROMAT_FILE: MSMg01no064_k04.g1 PHD_FILE: MSMg01no064_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCGCAGTGGGCCTATAGACTCACTATGGGAGAGGATCCGCGGAATTC
TCACATGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCACAACAACCCTAAGATTCCACC
TCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT
CAACTTATGAATGCCCACCGAAAATATGGTACATCTACACAATGAAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGTCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACT
CACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGAT
ACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAAT
GAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAAC
ACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATTAAAGGGT
GGACCATGTAGAGACTGCCTTATCCAGGGATCCACCCCATAATCAGCATC
CAAACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCC
AGATGTAGTTGTCTCCTGTGAGACTATGCCGGGGCCTAGCAAACACAGAA
GGGGATGCCCCCAGTCCGCTAATGAAAGGATCCCGGGGCTCCCCATGGAG
GAACTTAAGAAAGTTCCCCCAGGAGTTAAGGGGATTTGGCCCCCTATTAG
GGGGGATCACTTTTTGAATAACCCGNTTTCCGGAGGCTTTTTATTCTACT
GGCATATGTTCAAAAAAGGGCCCATTCCGCCCCTTCTTTGAAAAAAAGCC
CTTTGTTCCCACAACTTTTTATTTCCCTAACAGGGGAAACCCCTGGGC
NNCCACTGACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTGCACTGAACTGCCAATTTCCTGACCATA
CATCTTAGATTTGTTCCAAAGAACCATTTCTAAACAGGTCTACTTCCCCT
GTATCCTAATAACCTATCTTTTCTACTACCTCTGGTGGGTGGTGGGCTAG
AAGGGAAGTTACAGCATTTAAGAACCATTATATTAAATGGAGGGTTTGAA
AACTTTATGACTAAATAAGGACAAGAAGACCCAGCACAGGAAAGCAGTCA
GAGGGCAGTTCTAAGGCAAGGTTGAGCTGAAGGTCTGGGCAACTGAGGCA
GCAGGAATCTAGGCTTTGCTTCCAGAGGGCACAGGTCCTGGCTGCCCAGA
TTCTGCACAGGATGAAGCTGCGTTTTAGAGGAGGAGACAGTCTGGAAGAG
TTTTTTTTTCCCCCCCCGCTTTAAATCATTCCACTCCCAGAAAAAAGGGA
GGTGATTTCTCCTTCCCCATCTAACTTTCAGAAGATGATCAGATGTTCCC
TAAGGTAAGGAAATGTCAACTAGAGCCACCAGTGTCCAGCACACACTACC
ACCACTACCACCACCACCACCGTGACCAGCAGCAGCAGCAGCAACATCAA
CAACAAACAAAACTCTATAAAAACATAGAACAGTACACCTGAAAAATGGG
AGCTAAAACGGAACACATGCACGTTTACAGATAATCTAGGTGTGATGGTT
TTAATGAAAATGGCCCGTATAGGCTCATAGGAGCAGTACAATTAGGAGGT
ATAGCCTTGTTAGAGTAGGTGTGGCCTTGTTGTAAGAAGTGTGTCACTAC
AGATGGCCTTTGAGGTTTCAGACTCTTATGCCAGACCCCGGGTCTCATTT
TCTCCCGCTTCTGGTAAACCAGAAGGAAAATTTTGGGCTTTCTTTTCAAC
ACTATGGTGGGTTGTACACTGGCCTGGTTTTCCCCCTTGAGAAAAAAAAA
AATTCTCTTGACTTGTAACCCGCCCCCATTAAAAGGTTCTTTTTAAAAAT
TGTGGGCCCCTGGGGTCTCTTCCCCTCTATAAATACCCCTATACTTTTTT
TTTACATAATCTCTGAGGGATGTATTTCATCCTTTGCCAATTTTTTTTCC
CGTGGGGTGTGAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_k04.g1 MSMg01no064_k04.g1 CHROMAT_FILE:
MSMg01no064_k04.g1 PHD_FILE: MSMg01no064_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:42 2005
         (379 letters)



>mm_chr14_67034383_67035161
          Length = 779

 Score =  632 bits (327), Expect = 0.0
 Identities = 366/379 (96%), Gaps = 1/379 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcactgaactgccaatttcctgaccatacatcttagatttgttccaaagaaccattt 60
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 202 tgtgaactgaactgccaatttcctgaccatacatcttagatttgctccaaagaaccattt 261

                                                                       
Query: 61  ctaaacaggtctacttcccctgtatcctaataacctatcttttctactacctctggtggg 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 262 ctaaacaggtctacttcccctgtatcctaataacctttcttttctactacctctggtagg 321

                                                                       
Query: 121 tggtgggctagaagggaagttacagcatttaagaaccattatattaaatggagggtttga 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggtgggctagaagggaggttacagcatttaagaaccattatattaaatggagggtttga 381

                                                                       
Query: 181 aaactttatgactaaataaggacaagaagacccagcacaggaaagcagtcagagggcagt 240
           |||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaactttatgactacataggg-caagaagacccagcacaggaaagcagtcagagggcagt 440

                                                                       
Query: 241 tctaaggcaaggttgagctgaaggtctgggcaactgaggcagcaggaatctaggctttgc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tctaaggcaaggttgagctgaaggtctgggcaactgaggcagcaggaatctaggttttgc 500

                                                                       
Query: 301 ttccagagggcacaggtcctggctgcccagattctgcacaggatgaagctgcgttttaga 360
           ||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||||||
Sbjct: 501 ttccaaagggcacaggtcctggctgcccagagcctgcacgggatgaagctgcgttttaga 560

                              
Query: 361 ggaggagacagtctggaag 379
           |||||||||||||||||||
Sbjct: 561 ggaggagacagtctggaag 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)