BAC Information

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BAC

Clone NameMSMg01-064N04
Chromosome14 (Build37)
Map Location 76,187,442 - 76,187,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30
Downstream geneLOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N04.T7 (MSMg01no064_n04.b1)MSMg01-064N04.TJ (MSMg01no064_n04.g1)
ACCAG290184AG290185
length708737
length of high quality
(start - end)
---291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no064_n04.b1 PHD_FILE: MSMg01no064_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:04 2005CHROMAT_FILE: MSMg01no064_n04.g1 PHD_FILE: MSMg01no064_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTTACGGAGGGCATTGGCGCGATTGGATGGCCTNCCGTCTTCGGTT
CGNGGGGGTGATCCTAAATAAAAATTTTTGGGGCGGGGNGGGGNNCCCCC
CGGGGGGGTTTNTCTCCCTCGCCNCCCTGTGTTTCTTTCCCAGACAAAAA
AAAAAATTACTTTTTCTCCAAAAAAAACCCCCCCGCGGCGGGGTGCGGCC
CGGGCCGCNNNAAACCTTCCAACCCTAAATTAAGGGGCGGGNAAAGGAAA
GGGGGAAAATCCCCCGGGCCGGGGGGNAAAAAAATTTTCCAACCCTTTTT
TAAATTTCCCCCAACCCCCCGCAGGAAAACAAAACCTTTTCCTAAGGGGG
NAAAAAATTTATGTGCGCTAAAAATGGGGAGGGGGGGGGAAAAAAGGGGG
AAACTCCCCCTCCCGGGGGGGGGAAAAAAGCGGTTTATAAAAAAAGAACC
CCCCTTTTNTTTCTCCCCCCCTCCCTTTTTTTTTTTNNGNNNAAAACACG
GAGGCCCCCCCTCCCCTTTTTTTGGAGAAAAGGGGTCCCCCCCCCCCCCC
CCTTTTTCCAAAAAAGGGGGGGTAAAAGGGGGGGGGGGGGGGGTTTTTTG
TGAAAAAAAAAAAAAGGGGGGTTTTTCTCTCTTCAAAAAATTGTTATAAA
GGGGGGGCGGGCAAAAAAAAAACTCCCCCCGGAAAAAAAAACGCAGGGGC
GGGGGGGG
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCTCTCGTAAACTTCTTAAACCAGA
GCTCTCGTTTTCTTTTTCTTTTTTTCATTAGCTATTTATTTACTTTACAA
TCTGACCGGAGCCTCTCGTTTCCTAAACTCTTCTTAACTTTGGCATAGTT
GCGGTCCAGACCAATTGTCTTGTCAAGTTCTGGATTCATGGGATTATTTC
CTCGTGATTAAATTTAGAAACCTTTAGAACAATGGCGGATATTCACAAGA
CTTCCTTCATTTCTGGACATGCACTCTGCCAGTTTGTTATTGTTACCCAC
GGAGCAAGGTGCATATATTAAGATGCGGCTTGTTCAAGGTTCCTATCTCC
TCAACAAAGCCCCTCCTCTTTGCATTGAAAACGGATGTGGACTGCTGGGT
TTGTTTCTTGGAAGCCCTTGCTTCTGTGTCCTGGGGATGTCTTATCGTCT
AGCACTCTCTGCTCTCCAGCACAATGCCTACCAGTTCTCAAAACCAGTTC
TCAATAGTCCTTGCCGATTGTCCTTGGAAAGTTTTGTTATAAAGTTCTTC
TGTGTGTTTCCTTTTATATTGCGTCACATAACATAAAACAGTGTAGTTGG
GTTCTCTTTAGAACAAGAACCAATATAATGACTATATTCAAAGGGGATTT
ATTCAGCCACCTCACATGATATGGCCCGGGTAGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n04.g1 MSMg01no064_n04.g1 CHROMAT_FILE:
MSMg01no064_n04.g1 PHD_FILE: MSMg01no064_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:04 2005
         (291 letters)



>mm_chr14_76187242_76187927
          Length = 686

 Score =  509 bits (263), Expect = e-148
 Identities = 282/291 (96%), Gaps = 5/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctctcgtaaacttcttaaaccagagctctcgttttctttttctttttttcattagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctctcgtaaacttcttaaaccagagctctcgttttctttttctttttttcattagcta 260

                                                                       
Query: 61  tttatttactttacaatctgaccggagcctctcgtttcctaaactcttcttaactttggc 120
           ||||     ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ttta-----tttacaatctgaccggagcctctagtttcctaaactcttcttaactttggc 315

                                                                       
Query: 121 atagttgcggtccagaccaattgtcttgtcaagttctggattcatgggattatttcctcg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 316 atagttgcggtccagaccaattgtcttgtcaagttctggattcgtgggattatttcctcg 375

                                                                       
Query: 181 tgattaaatttagaaacctttagaacaatggcggatattcacaagacttccttcatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgattaaatttagaaacctttagaacaatggcggatattcacaagacttccttcatttct 435

                                                              
Query: 241 ggacatgcactctgccagtttgttattgttacccacggagcaaggtgcata 291
           ||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 436 ggacatgcactctgccagtttgtcattgttacctacggagcaaggtgcata 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 686
Length adjustment: 9
Effective length of query: 282
Effective length of database: 677
Effective search space:   190914
Effective search space used:   190914
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)