BAC Information

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BAC

Clone NameMSMg01-064O21
Chromosome14 (Build37)
Map Location 113,369,908 - 113,370,531
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064O21.T7 (MSMg01no064_o21.b1)MSMg01-064O21.TJ (MSMg01no064_o21.g1)
ACCAG290261AG290262
length1,2011,288
length of high quality
(start - end)
625 (91 - 715)379 (71 - 449)
definitionCHROMAT_FILE: MSMg01no064_o21.b1 PHD_FILE: MSMg01no064_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:16 2005CHROMAT_FILE: MSMg01no064_o21.g1 PHD_FILE: MSMg01no064_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCATTCTTNNNNNAAACAGTGGGCGCTNXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCATGCTCTTTTATGCCCATTTAAATGATTATGATGC
TTACAAACTGCAGAATTTATCCCAATTTTAATATTAAGGCACAAGAATGA
AAGCAGCTGCATTTATTTACTAAGTTCATGATATTACTCACACCTGTATA
TAATGCATTTTCATTACTTTCGTCCCTACCATATTTTATGCCTCCTTTTC
CTCTCCTGTCCTCCTCTTCTCTACTAGTTAGTCCCGACCTTGTTTTAATA
ACTCTGTTCTATTTTTGTTCCCCAAGTCTGTCTGTATTTGTATCACAGCA
AATGGACCTTACTAAGAAATATAAGTGAAGGATTAATTTATTCAAAAAAA
AATCCATCCACATTCTTTAACTATTTCTTCCAGGATGAATATAAGCAACT
CTCCCCCAATTGGTTCATCTGTTAAAAACTTTGGTCCCCAGAAGTGGTAA
TGTTTGGGAAGACTGTGGAATCTTTAGGATGGAGAACATTAAGAGATAAA
GATTTTTGTTGGTGGGTGAGCCTTCAGAATTACAATCTTCATTTGTTTCA
GAAACCTAGTTTCTTCTTTCTTTCTCTTTTATTAGATATTTTCTTCATTT
ACATTTCAAATGGTATCCTGAAAGTACCCTATACCCTCTCCCTGCCCTGC
TCCCCTATACACCCACTCCCACTTCTTGGCCCTGGAATTCCCCTATACTG
CGCCATATAAAGTTTGCAAGACCAAGGGACCTCTCTTCCCAATGATGTCC
GATTAAGCCATCTTCTGCTACTTATGCAGCTAGAGACACAACCTCTGTCG
TCACTGGGTAGCTCATATTGCCGTTCCCCCTAAAGTTTGCAGACCCCTTC
AGCTCCTTTGGTTCCTTTCTTCCACTCCTTCCATTGGGTGGTCCTTGGGT
CCCTATCTCAAAAATTACTGTGTAATATCCATTTTTTTGCCACTTTTTTT
GTTTACCTTTCCCTAAACCACCTTTAATCTCGTTTTCTTTTACTCCAAAA
CCTTGTTTTCCTTAATATTTAATTTTTCCCTTTTTTTCATCCTTCTATAT
TAACTCTTCATCTCCCCCCTTCTCATCCTTCTTATTGTTACCTAACTCTC
TTTTATCTTTTTATACTTTTTTTCTCTTTACTGCTTTCTATTTCTCTTTT
C
NNTTGAAGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATACAGAATGGCAGAGAAG
CACCTGAAAAATAATGACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCATCTCATACCAGTCAGAATGGCTAAGATTTAAAAT
TCAGGTGACAGCAGATGCTGGCAAGAATGTGGAGAAAGAAGATCACTCCT
CCATTGTTGGTGGGATTGCAAGCTTGTACAACCAATCTGGAAATCAGTCT
GCTGGTTCCTCAGAAATTGGACATAGTACTACCGGAGGATCCCGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACA
TGCTCTACTATGTTCAAAGCAGCCTTATTTATAATAGCCAGAAGGTGGAA
AGATTTTTTCTCCCCCCCCCCAGAGGGATGGATACCCAAAAAAAGAAAGA
TTTACNCAATGGAGTACTACTCAGCTATTAAAAAGAATGAACTTATGAAA
TTCCTAGGCAAATGGATGGATCTGGAGGGCATCATCCTGAGTGTGGTAAC
CCAATCACAAAAGAACTCACATAATATGTACTCACTGATAAGCGAATATT
ACCCCATAAACTTTGATTACCCTATATATAATATACCTTTGCGATATACT
TGAATCTCAAGAAGAATGAAGACCCGCTATGTATACTTTTGCCCCCTTCT
TATAAAATGGTCACCAAAACTTCCCTGCTATGGCTGCTTCTCAATTCTTC
TCATTGTTAGTCTGATACTTAATTGCTTGGTACCATTCTTATTGCTTGGC
CAATTTCCGTCCTACTCTTCCCCATTACTTCCCCCTTCACCTTCTTGTAA
ACTCATTTGCTTCCTCCTCTTCTCCATATTTTCTTTTGCTTATCTTTTTC
TATACTTATCTCCTTTTTCTTTCATCTATTTCTTTGTCTTCTCTTCTAAC
TCTCTTTCTTTATTGCTTTTCTTCTCCCATCTCTTTCTTCTGATTTTGTT
ATCCTCTCCTCCCCCTCTTTTTCTCTCTCCTCTTCTCTCTTATCTACCCT
CTTTACTTCTCTCTCTCTCTTTCTTTTTCTCCTCTTTTTTATTCTTTCTC
TCTCTTCCTTTCTCTTTTTTTCTCTTTATTCTTTCCTATCTTATCTTTAC
TTCCTCTTCTTCTCTCTCTTTATTTCCTCTCTCTCTCTTCTATTTTCTCC
CCTTTACTCTCCATCCTTCTCATCTCTCCTATTTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_o21.b1 MSMg01no064_o21.b1 CHROMAT_FILE:
MSMg01no064_o21.b1 PHD_FILE: MSMg01no064_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:16 2005
         (625 letters)



>mm_chr14_113369708_113370731
          Length = 1024

 Score = 1077 bits (557), Expect = 0.0
 Identities = 608/625 (97%), Gaps = 1/625 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatgatgcttacaaactgcagaatttatcccaattttaatattaaggcacaagaatga 60
           |||||||||| ||||||||||| |||||||   |||||| ||||||||| ||||||||||
Sbjct: 201 attatgatgcctacaaactgcacaatttattggaatttttatattaaggtacaagaatga 260

                                                                       
Query: 61  aagcagctgcatttatttactaagttcatgatattactcacacctgtatataatgcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 aagcagctgcatttatttactaagttcatgatattactcacacctttatataatgcattt 320

                                                                       
Query: 121 tcattactttcgtccctaccatattttatgcctccttttcctctcctgtcctcctcttct 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tcattactttcatccctaccatattttatgcctccttttcctctcctgtcctcctcctct 380

                                                                       
Query: 181 ctactagttagtcccgaccttgttttaataactctgttctatttttgttccccaagtctg 240
           ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ctactagttagtccctactttgttttaataactgtgttctatttttgttccccaagtctg 440

                                                                       
Query: 241 tctgtatttgtatcacagcaaatggaccttactaagaaatataagtgaaggattaattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtatttgtatcacagcaaatggaccttactaagaaatataagtgaaggattaattta 500

                                                                       
Query: 301 ttcaaaaaaaaatccatccacattctttaactatttcttccaggatgaatataagcaact 360
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttc-aaaaaaaatccaaccacattctttaactatttcttccaggatgaatataagcaact 559

                                                                       
Query: 361 ctcccccaattggttcatctgttaaaaactttggtccccagaagtggtaatgtttgggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcccccaattggttcatctgttaaaaactttggtccccagaagtggtaatgtttgggaa 619

                                                                       
Query: 421 gactgtggaatctttaggatggagaacattaagagataaagatttttgttggtgggtgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 gactgtggaatctttaggatggagaacattaagagataaagatttttgttggtggatgag 679

                                                                       
Query: 481 ccttcagaattacaatcttcatttgtttcagaaacctagtttcttctttctttctctttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccttcagaattacaatcttcatttgtttcagaaacctagtttcttctttctttctctttt 739

                                                                       
Query: 541 attagatattttcttcatttacatttcaaatggtatcctgaaagtaccctataccctctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 attagatattttcttcatttacatttcaaatggtatcctgaaagtaccctataccctctc 799

                                    
Query: 601 cctgccctgctcccctatacaccca 625
           |||||||||||||||||| ||||||
Sbjct: 800 cctgccctgctcccctattcaccca 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1024
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1014
Effective search space:   623610
Effective search space used:   623610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)