BAC Information

Click to search

BAC

Clone NameMSMg01-064P14
Chromosome14 (Build37)
Map Location 95,595,400 - 95,595,711
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043356, LOC100043783, LOC677613
Downstream geneLOC100043784, LOC382931, 4921530L21Rik, Klhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P14.T7 (MSMg01no064_p14.b1)MSMg01-064P14.TJ (MSMg01no064_p14.g1)
ACCAG290294AG290295
length734731
length of high quality
(start - end)
316 (45 - 360)---
definitionCHROMAT_FILE: MSMg01no064_p14.b1 PHD_FILE: MSMg01no064_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:20 2005CHROMAT_FILE: MSMg01no064_p14.g1 PHD_FILE: MSMg01no064_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTGTGGTGGAATTTCCTTAATTAAATCACTTAAAGTGGGAAGAC
TTGTTATTAATCCATTCCTTCTGGTGGCAGCCTATATAACGGACATGGAA
GAAAGAATCTTTTTGTCTTTGCCTTCTTGATCTCCCTCTCACTGGCAAGT
CCATTCCTCTACTGTCATTAGACCCTACATTATAAGGATTCTGGTGTATA
GTGAAGAGCAAGTGTAATAACCAAGATCATAGCCTGAACAACTGCTTGAT
TCTTAGACGTTCCACTGTTAGAAAAGCTCATCCAAAAGCTGTAAGTTATA
TATATGAATATATATGTACATACATCGCATACATATATAAATATGTATGT
ATATACACACATATATATTCATAATATGATTTAAAATATATAAAAATATA
ATATATAATATTATATTATATTATTATTATAAAATATAAATTTTTTGAGG
TTTGCAGGCAAATAGATGGAACTAGAAAAATATCCTGAGTGAGGTAACCC
AGACCCAAAAGGAAATGCATTGTATGTACTCACTAATAAGTGGATGTTAG
CCCCCAAAAAGTGCCTAATGCCCAAGATAAAGCCCACAGAAATAAAAAAG
TTTAACTAGCTGAAGGGCCCAAGTAAGGATGCCTCCATACCACTTCGGAG
TGAGAAGAAAGCAACCACAAGGAGGAGGGAGGCA
ATCGATGAAGTGGGTAGCCTGGCGGCCCCCCGGCCCTCCAACTTAAGGGA
CACTATAAAGGAACCCCGGAATTTCACTGAAGAATTTCCTGAAAGAACTA
ATGGACCATGGAGTGGTACCGGGGAAAAAGAAAAATGGTTGGAAAAATAC
CCTGGCCGAACGGGGGGAATTAAAACCCTCCGGGTGGACTGGCCCAAAAT
AAATATGGTTGCCTTTAACAATTTAAATTAACTGAATTATTCCTAACAAT
ACCCTTTACCTTTTACTGGAAATAAAAGCTAAGGGGGTGGATTAAATGGA
ATGGGTAAAAGGCAAGCCCCAAACTATTCCGGCTGGGAATTAAAAAAAAA
TTTTTGAAATTAAATANTTACCAAAACGGACACCAGTCTTTCGTAAATAG
GCAGGTAATAAGTTTATGGGAAAAAAAAAAAAACCGAAACTTAGCGTGGC
CGGGAATTAAAAGCCCGCTTGGACCGGCCGGAATGGGGTTTGAAACTGGC
CAAAGAAACCAACTAAAGATTAACGGGACAAAGGTATGAAAGAAACCAAG
GGAAAAAGGAAATGGAATATGAAAAAGGCTATTAAGGGAATTTCCTTACC
CGGAAAGAAATTCCCCCAGGCTTCCATACCCCCAAATTACAACTAACTTT
GGAATTTGGGTATTACCAGCGCACTATCAACGTTTCCTACACACGGAAAC
CATACTTGGCACCCCGTCTCCAAATTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p14.b1 MSMg01no064_p14.b1 CHROMAT_FILE:
MSMg01no064_p14.b1 PHD_FILE: MSMg01no064_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:20 2005
         (316 letters)



>mm_chr14_95595196_95595911
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctgtggtggaatttccttaattaaatcacttaaagtgggaagacttgttatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctgtggtggaatttccttaattaaatcacttaaagtgggaagacttgttatt 264

                                                                       
Query: 65  aatccattccttctggtggcagcctatataacggacatggaagaaagaatctttttgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatccattccttctggtggcagcctatataacggacatggaagaaagaatctttttgtct 324

                                                                       
Query: 125 ttgccttcttgatctccctctcactggcaagtccattcctctactgtcattagaccctac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgccttcttgatctccctctcactggcaagtccattcctctactgtcattagaccctac 384

                                                                       
Query: 185 attataaggattctggtgtatagtgaagagcaagtgtaataaccaagatcatagcctgaa 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 attataaggattctggtgtatagtgaagagcaagtgtaataaccaatatcatagcctgaa 444

                                                                       
Query: 245 caactgcttgattcttagacgttccactgttagaaaagctcatccaaaagctgtaagtta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caactgcttgattcttagacgttccactgttagaaaagctcatccaaaagctgtaagtta 504

                       
Query: 305 tatatatgaata 316
           ||||||||||||
Sbjct: 505 tatatatgaata 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)