BAC Information

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BAC

Clone NameMSMg01-065D23
Chromosome14 (Build37)
Map Location 106,747,650 - 106,910,891
singlet/doubletdoublet
Overlap geneLOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742
Upstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807
Downstream geneLOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065D23.T7 (MSMg01no065_d23.b1)MSMg01-065D23.TJ (MSMg01no065_d23.g1)
ACCAG290503AG290504
length748763
length of high quality
(start - end)
456 (126 - 581)332 (163 - 494)
definitionCHROMAT_FILE: MSMg01no065_d23.b1 PHD_FILE: MSMg01no065_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:42 2005CHROMAT_FILE: MSMg01no065_d23.g1 PHD_FILE: MSMg01no065_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,910,436 - 106,910,891)(106,747,650 - 106,747,981)
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGTGCGGGACCAT
TCCCCATATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAA
TCCGCGGAATTCTAAAACGATTACCGAAATTTGTATTTTTGATAACTCGT
TCATGTGATAATTTGTCTGAGTGATAATTTGTGGGTGCATTCGCGTTTTG
AAATCGGACATGCACTGCTGTTGCACAAAGCAGTTTCTGCATTTTCCCTC
CACCATTTTTCACAATTGCTCACATGAGACAAGGCTTGTTTCCAGCCACT
CTGCTGAGACTGTTCATCATTTTGACTGGAATGCCACTGCATACGTCCTG
TCACAGAACACAGCTGCAGAAGCACCTTTGCTGGGAAGTCGCTGCTGACT
TGGTAGCATTTCATTTTATTCTTCTCTGTCATTGTGGACCCCTCAAGACT
CTTCTCTAGAATATTATACAGACTTTCGCTTTTTAGAAAGTCTTCCTTTT
GAGCTTAGACTAACTTGAACTCGTTATCCTCTTTAGCCTTCCACATGGTA
TGATTACAAGCAGCCTTAATGATACCTACCCACTATCAATAAACACTTTT
TAATCTTTTTTTTAAAAATACATTTTAACAATATATTCTCATCATGGTTC
CCTTCTCCTGACCCCATGGGATCCTAGCTAAGTCTGTACCTACACAACTC
TCCCTCTTTAGAATTATATTATCCCTGATACCACCCAAATGACCCCCA
NTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNNNNCCNTTT
CCTTNNCNTTTTATCCTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCT
AAGGAAGAAATGTGTTTGTAGTGTATAAAATAAAATCTTTGCAAGTTCCA
GATGACCCATGATGCTTTTCTCAGTGTAGGCAGAAGAGATAAATTGGAAA
GAAATTGTCCTTGAAGGATGCGAGGCTCTGAGCAGGAGATAGTTTGTTGC
CAGAAAGAAGGCAACAGATTGATTTTGAGCCTTAAGTTAGAACTTTACCA
TTCTTCTATTTACAATTTTCACGGTTCATCCCCTCAACGGCCTTCATTTT
TTTCCTAGGGATAATTTTTGATATTTTTCTTACTATTCATTAAAAAAGTT
ATGTCCTAAGTTATTTCATTACATGACTTCTTTTAAAAATATAATGATAG
GGCTGAAAAGCAATCTACAGATTCAATGCAATCCCCATCATAATTCCAAC
TCAATTCTTCAACGAAATGGAAGGAGCAATTTGCAAATTCGTCTGGAATA
ACAAATAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCT
GGCGGAATCACCATGCCAGACCTAAAGCTTTTCTACAGAGCAATTGTGAT
AAAAACTGCATGGCACTGGTATAGAGACTGACAAGTAGTCCATTGCAACA
ACAATTGAAGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_d23.b1 MSMg01no065_d23.b1 CHROMAT_FILE:
MSMg01no065_d23.b1 PHD_FILE: MSMg01no065_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:42 2005
         (456 letters)



>mm_chr14_106910236_106911091
          Length = 856

 Score =  812 bits (420), Expect = 0.0
 Identities = 447/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaatttgtatttttgataactcgttcatgtgataatttgtctgagtgataatttgtggg 60
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaaatttgtatttttgataattcattcatgtgataatttgtctgagtgataatttgtggg 597

                                                                       
Query: 61  tgcattcgcgttttgaaatcggacatgcactgctgttgcacaaagcagtttctgcatttt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgcattcgcgttttggaatcggacatgcactgctgttgcacaaagcagtttctgcatttt 537

                                                                       
Query: 121 ccctccaccatttttcacaattgctcacatgagacaaggcttgtttccagccactctgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 536 ccctccaccatttttcacaattgctcacatgagacaaggcttgtttccagcccctctgct 477

                                                                       
Query: 181 gagactgttcatcattttgactggaatgccactgcatacgtcctgtcacagaacacagct 240
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 476 gagactgttcattattttgactggaatgccactgcatacgtcctgtcacggaacacagct 417

                                                                       
Query: 241 gcagaagcacctttgctgggaagtcgctgctgacttggtagcatttcattttattcttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gcagaagcacctttgctgggaagtcgctgctgacttggtagcatttcattttattcttct 357

                                                                       
Query: 301 ctgtcattgtggacccctcaagactcttctctagaatattatacagactttcgcttttta 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 356 ctgtcattgtggacctctcaagactcttctctagaatattatacagacttttgtttttta 297

                                                                       
Query: 361 gaaagtcttccttttgagcttagactaacttgaactcgttatcctctttagccttccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gaaagtcttccttttgagcttagactaacttgaactcgttatcctctttagccttccaca 237

                                               
Query: 421 tggtatgattacaagcagccttaatgatacctaccc 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tggtatgattacaagcagccttaatgatacctaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no065_d23.g1 MSMg01no065_d23.g1 CHROMAT_FILE:
MSMg01no065_d23.g1 PHD_FILE: MSMg01no065_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:42 2005
         (332 letters)



>mm_chr14_106747450_106748181
          Length = 732

 Score =  619 bits (320), Expect = 0.0
 Identities = 329/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttgtagtgtataaaataaaatctttgcaagttccagatgacccatgatgcttttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttgtagtgtataaaataaaatctttgcaagttccagatgacccatgatgcttttctc 260

                                                                       
Query: 61  agtgtaggcagaagagataaattggaaagaaattgtccttgaaggatgcgaggctctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtaggcagaagagataaattggaaagaaattgtccttgaaggatgcgaggctctgag 320

                                                                       
Query: 121 caggagatagtttgttgccagaaagaaggcaacagattgattttgagccttaagttagaa 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggagatagtttgtttccagaaagaaggcaacagattgattttgagccttaagttagaa 380

                                                                       
Query: 181 ctttaccattcttctatttacaattttcacggttcatcccctcaacggccttcatttttt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctaccattcttctatttacaattttcacggttcatcccctcaacggccttcatttttt 440

                                                                       
Query: 241 tcctagggataatttttgatatttttcttactattcattaaaaaagttatgtcctaagtt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctaggtataatttttgatatttttcttactattcattaaaaaagttatgtcctaagtt 500

                                           
Query: 301 atttcattacatgacttcttttaaaaatataa 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 atttcattacatgacttcttttaaaaatataa 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)