Query= MSMg01no065_k24.b1 MSMg01no065_k24.b1 CHROMAT_FILE:
MSMg01no065_k24.b1 PHD_FILE: MSMg01no065_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:16 2005
(208 letters)
>mm_chr14_87257749_87258355
Length = 607
Score = 335 bits (173), Expect = 1e-96
Identities = 196/205 (95%), Gaps = 5/205 (2%)
Strand = Plus / Plus
Query: 3 gaattctccaatatta--tccgtaaaagaatccttatgggtagtttaaaagaaatttttt 60
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctccaatatgaatt--gtaaaagaatccttatgggtagtttaaaagaaatttttt 260
Query: 61 aatttactggtgtctaatattgtctaaacaaagttactaacttaaaactgttcggagtat 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 261 aatttactggtgtctaatattgtctaaacaaagttact-tcttaaaactgttcaaagtat 319
Query: 121 ccatcttttaatctaactgtatcacatgacatgctgacagagtaatcaaaatcatcaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccatcttttaatctaactgtatcacatgacatgctgacagagtaatcaaaatcatcaata 379
Query: 181 tgaatggaatgaacaagttatattt 205
|||||||||||||||||||||||||
Sbjct: 380 tgaatggaatgaacaagttatattt 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 607
Length adjustment: 9
Effective length of query: 199
Effective length of database: 598
Effective search space: 119002
Effective search space used: 119002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_k24.g1 MSMg01no065_k24.g1 CHROMAT_FILE:
MSMg01no065_k24.g1 PHD_FILE: MSMg01no065_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:16 2005
(187 letters)
>mm_chr14_87331635_87332221
Length = 587
Score = 339 bits (175), Expect = 9e-98
Identities = 184/187 (98%)
Strand = Plus / Minus
Query: 1 gtggactgtgtgagtgggattctccttgactgctcagtaacccactggaaagcagtgtct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 387 gtggactgtgtgagtgggattctccttgactgctcagtagcccactggaaagcagtgtct 328
Query: 61 ctgtgttgcgtgcctgttgagcacttggatgcagatatgactctcttctgtagtcctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgtgttgcgtgcctgttgagcacttggatgcagatatgactctcttctgtagtcctcct 268
Query: 121 cgctgaggtcctccttaaaaacctgatacatagggttttgtacttgttagatatttgata 180
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cactgagctcctccttaaaaacctgatacatagggttttgtacttgttagatatttgata 208
Query: 181 cataggg 187
|||||||
Sbjct: 207 cataggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space: 103641
Effective search space used: 103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
