Query= MSMg01no065_l11.b1 MSMg01no065_l11.b1 CHROMAT_FILE:
MSMg01no065_l11.b1 PHD_FILE: MSMg01no065_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:18 2005
(544 letters)
>mm_chr14_23001723_23002666
Length = 944
Score = 1000 bits (517), Expect = 0.0
Identities = 537/544 (98%)
Strand = Plus / Plus
Query: 1 tctcttgcctcagcctccggcataggggagtctataagagcctctaaccatggctggtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttgcctcagcctccggcataggggagtctataagagcctctaaccatggctggtta 260
Query: 61 gtcttttaatttcttaatgagaaaaccctcacgtgctttgtttaagcgggtgaaaggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttttaatttcttaatgagaaaaccctcacgtgctttgtttaagcgggtgaaaggagt 320
Query: 121 gcagctttgcaaacttgtatgggtgtgtctccaactgaacattcttctcctgactttgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagctttgcaaacttgtatgggtgtgtctccaactgaacattcttctcctgactttgat 380
Query: 181 ttctctcttggtgcatgggaatataatttgccttgacatcactggccatcagtgccacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctctcttggtgcatgggaatataatttgccttgacatcactggccatcagtgccacag 440
Query: 241 tgaagtgtttcttctttgactggaagtgacagcccctggcccctgtgacattgtttccat 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagtgggtcttctttgactggaagtgacagcccctggcccctgtgacattgtttccat 500
Query: 301 agatttacaatgaaacagttttatattttacaaaatagagtgatctcccgcgactggcat 360
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct: 501 agatttacaatgaaacagttttatattttgcaaaatagagtgatctcctgtgactggcat 560
Query: 361 tgatgtggtttcccccatggttctttggtaaggtaaagctgtctccattgacccacccta 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 tgatgtggtttcccccatggttctttgggaaggtaaagctgtctccattgacccacccta 620
Query: 421 aattgattttccttattctggcatctggacacattgcacttaggctgcccaagacagtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattgattttccttattctggcatctggacacattgcacttaggctgcccaagacagtga 680
Query: 481 ttatcattgtttgtcattatcgtcagngttagatgctatcttacactgtctccttccttc 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 ttatcattgtttgtcattatcgtcagtgttagatgctatcttacactgtctccttccttc 740
Query: 541 taag 544
||||
Sbjct: 741 taag 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_l11.g1 MSMg01no065_l11.g1 CHROMAT_FILE:
MSMg01no065_l11.g1 PHD_FILE: MSMg01no065_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:18 2005
(347 letters)
>mm_chr14_23164908_23165653
Length = 746
Score = 642 bits (332), Expect = 0.0
Identities = 341/344 (99%), Gaps = 1/344 (0%)
Strand = Plus / Minus
Query: 3 caattcaggcaaatggggggggaggaatatctatttttaaaagcagcttaagaaactagc 62
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caattcaggcaaat-gggggggaggaatatctatttttaaaagcagcttaagaaactagc 487
Query: 63 agaagaggaaacagaaaattcaacaggtttgtatttattgaagaaattgagttactagtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agaagaggaaacagaaaattcaacaggtttgtatttattgaagaaattgagttactagtt 427
Query: 123 tttaaagctttctctttaggaaattggcagacccaaatgatttcacctctaccaaaaatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttaaagctttctctttaggaaattggcagacccaaatgatttcacctctaccaaaaatt 367
Query: 183 tggaaagacatacaaaaatttgcacagtgtgcaagagaaaggagagcacttgtgaactca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tggaaagacatacaaaaatttgcacagtgtgcaagagaaaggagagcacttgtgaactca 307
Query: 243 tctggagatgagtgacctttctgtctaaatctaaaagagcacgcggaagggacaactctc 302
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 306 tctggagatgagtgacctttctgtctaaatctaagagagcacacggaagggacaactctc 247
Query: 303 cattataaacctagacttcaaaaccttgaaacaacagcgaatga 346
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cattataaacctagacttcaaaaccttgaaacaacagcgaatga 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 746
Length adjustment: 9
Effective length of query: 338
Effective length of database: 737
Effective search space: 249106
Effective search space used: 249106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
