Query= MSMg01no066_f03.b1 MSMg01no066_f03.b1 CHROMAT_FILE:
MSMg01no066_f03.b1 PHD_FILE: MSMg01no066_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:04 2005
(524 letters)
>mm_chr14_57660105_57661031
Length = 927
Score = 934 bits (483), Expect = 0.0
Identities = 512/523 (97%), Gaps = 3/523 (0%)
Strand = Plus / Minus
Query: 5 gaattcttaaactttgcccacagattttaatcccttctgatgggatcagccctgccccat 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaattcttaaactttgcgcacagattttaatcccttctgatgggatcagccctgccccat 668
Query: 65 accatgacctaaggacttgaattaggctccacctcttaaaggtcccaccttaacctatga 124
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 667 accatgacctaaggacttgaattaggctccacctcttaaaggtcccaccctaacgtatga 608
Query: 125 accttattgaaaccctggtaaggggccttcctgatatgggcaggtgagtaccc---cttc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 607 accttattgaaaccctggtaaggggccttcctgatatgggcaggtgagtaccccttcttc 548
Query: 182 tagggacagctctgagggatgagtaggtttcgggctgactggaagagaggacagagggag 241
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 547 tagggacagctctgagggatgagtaggtttagggctgactggaagagaggacagagggag 488
Query: 242 ctggaatggttctttggcatctctcagtcaggggaatggctgcttcctgtacagcagttt 301
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 487 ctggaatggttctttggcatctctcagtcaggggagtgactgcttcctgtacagcagttt 428
Query: 302 aagtctttgaagtgcaatgctttaccctctaaagacattcagagcagtgcgtgtcacaat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aagtctttgaagtgcaatgctttaccctctaaagacattcagagcagtgcgtgtcacaat 368
Query: 362 agggactgggaatgtgggatttgtcaagagtaagatttagttttctatcttaacctgata 421
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agggacagggaatgtgggatttgtcaagagtaagatttagttttctatcttaacctgata 308
Query: 422 agcagagcattggaggtgtgcttgaggttaataattagctgtttctttagactgctagga 481
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agcagagcactggaggtgtgcttgaggttaataattagctgtttctttagactgctagga 248
Query: 482 agtgaagcttcatttaattccaagcctgttcttaaagattagc 524
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agtgaagcttcatttaattccaagcctgttcttaaagattagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 927
Length adjustment: 10
Effective length of query: 514
Effective length of database: 917
Effective search space: 471338
Effective search space used: 471338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_f03.g1 MSMg01no066_f03.g1 CHROMAT_FILE:
MSMg01no066_f03.g1 PHD_FILE: MSMg01no066_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:05 2005
(532 letters)
>mm_chr14_57526999_57527930
Length = 932
Score = 978 bits (506), Expect = 0.0
Identities = 525/534 (98%), Gaps = 5/534 (0%)
Strand = Plus / Plus
Query: 1 atatggtggaagaggagagctgtctcccagtattagagctgacttctgcaagttgttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atatggtggaagaggagagctgtctcccagtattagagctgacttctgcaagttgttaaa 255
Query: 61 aaacaagagaacaacaacaaaaaacccaaaccaatccctctctgaaaacctaaaatgcag 120
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaacacgagaacaacaacaaaaagcccaaaccaatccctctctgaaaacctaaaatgcag 315
Query: 121 ttagactgatacagtttttaattagctcttatatttttaggct-----tttttttttttt 175
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 316 ttagactgatacagtttttaattagctcttatatttttaggctgtttttttttttttttt 375
Query: 176 ttttttttttttttggaggagagaatagattaagagttagaaaacttatatcagcattgt 235
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttttttttttttttgtagtagagaatagattaagagttagaaaacttatatcagcattgt 435
Query: 236 ggtgctaatctgtaatcctagcatttgggaattaaactcaagagccatcagtaacccaga 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggtgctaatctgtaatcctagcatttgggaattaaactcaagagccatcagtaacccaga 495
Query: 296 gttatactcaggtacatagagaatttgaggctatcttgactcaaaaaagaaagttataaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gttatactcaggtacatagagaatttgaggctatcttgactcaaaaaagaaagttataaa 555
Query: 356 atcttgctatttataccaattcttctactggtgttatttggaaaaatgttactgtagttt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atcttgctatttataccaattcttctactggtgttatttggaaaaatgttactgtagttt 615
Query: 416 tattatctttttatataaagctgagggtttagaaaaatgattaattaccattctacctat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tattatctttttatataaagctgagggtttagaaaaatgattaattaccattctacctat 675
Query: 476 tccaaaaatgttcttaaatattgtgggagagaaaacctgtaagaaggggaaatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tccaaaaatgttcttaaatattgtgggagagaaaacctgtaagaaggggaaatg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
