BAC Information

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BAC

Clone NameMSMg01-067P17
Chromosome14 (Build37)
Map Location 103,525,650 - 103,525,935
singlet/doubletsinglet
Overlap genePhr1
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441
Downstream geneLOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067P17.T7 (MSMg01no067_p17.b1)MSMg01-067P17.TJ (MSMg01no067_p17.g1)
ACCAG292585AG292586
length881706
length of high quality
(start - end)
77 (46 - 122)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no067_p17.b1 PHD_FILE: MSMg01no067_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:15 2005CHROMAT_FILE: MSMg01no067_p17.g1 PHD_FILE: MSMg01no067_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTCTTTGTCACCTTTTGGAATGATTTGAATATAATTAGTATTA
TGGGGTTTTTTTGGGGGGGGCGGGCCCGATTAANTATNTNTANNTNTAAT
GTATAAACAATATATTGCATTGTACCTCTTAATTGCGTATTGATTCTTTA
TTGTTTGTATAGAGTAAGTGTCGGCCGCGTAGTCGCGAGTACGGCGGATG
AGTGTGGGATATTGATGACCATTTATAAGAAATGGTGATGAGAGAGGATG
TAAGAAGTGTATGTATGTGGTGTTGGTGTTTAGAGAGGAATATAGAATTT
GTATTTTTATTTAAGAAAATAAACGAGCGGACCTAAACAGAATAAGATTT
TTTTTTTTTTTTCCCACCACCCCCCCCCCCCAGATTTCGTTCGTCTTTGG
GGTGTCGGTGAGGGGCATGCACCCCCTAAATAACAAATAAAAAAAAAAAT
AAATCTGCGGGGGGGGCGGGCTTGTTTGTATTACTCCAGCCTCTCTTTAA
TTGTTATTCTTGATGTACGCGCTCTGATCTTAGAAAGATGTGCAGATATC
GCGTTACAGTATTTGGGTAAGATACATCGCACCGCCGCCGATAGTTTGAC
ACCTAGCTGCGCGGATACTCTCGCCCACCGCTCTCTCACAAACATCCGTT
AAAAAGTCTACGAGCCGCGTCGACACTGCGGTATTATCACGCTACTGCTC
CAGCGTTGATCTCTCGAAATTATCATAGGCCAACTAGCGCTCAGTCTCGT
CCGGTCGTGCAGCNTCAATGCCATTCCCGCATTCAGTTCCCCGTATAGAT
GTTCTTTGCCTCCGCCGCGTCCTCTGCATTG
ACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACATCTTCATCTGAGTGCTACCTTCC
AGGCAGCTAAGACAAGAGTACTAAAGCCCACAGCAACAAGGCCACACCTC
CCAACAGTGCCACTCCCTGAGCCGAGCACATACAGACCATCGTAGCCAGT
ATGTGACTTATCCTACTTTGCAGACATGCTTCATCCTCCCTCTTAACTTT
TAATTCTTTTACCTGTGTGTTCTCGGAATTCCACCATTGCCTTCATTGTT
TTAGAATCTGCTAATGCCATCAACCAGAACAGTTTTGTTCTACCACAGCC
TTCATGGAGTTTTTTTTTTACCGCCCCCTCTTCTTCTTTGAAGACCTGTT
GTTCCATTACAGAAGAGGGATAAATGAGATTAGTTCTGGGCAGAAGCGGA
TGTCATCTTTCAGCAACTGTGGCTTTCTTTATAAAGCAGTGTAAGATGTT
CTAGACCCACTCAGCATTCTCTCCTGTGTTCACAACTGCTCCATGTGTGT
TGTTAATGTGCTAACCAAGTCTTGGAAAATCCAAGTACTTGCTCGTTTTG
CATTCAGTGCGATCTATTTAGAGTCTAGTCAGGCCATTCCAGATTCCCTT
TCCCCCGTTTCCCTCCCTCGCCTTTTTATTACCTCTCGGCCTTGATTACA
CTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_p17.g1 MSMg01no067_p17.g1 CHROMAT_FILE:
MSMg01no067_p17.g1 PHD_FILE: MSMg01no067_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:15 2005
         (287 letters)



>mm_chr14_103525450_103526136
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatcttcatctgagtgctaccttccaggcagctaagacaagagtactaaagcccacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tacatcttcatctgagtgctaccttccaggcagctaagacaagagtactaaagcccacac 260

                                                                       
Query: 61  caacaaggccacacctcccaacagtgccactccctgagccgagcacatacagaccatcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacaaggccacacctcccaacagtgccactccctgagccgagcacatacagaccatcgt 320

                                                                       
Query: 121 agccagtatgtgacttatcctactttgcagacatgcttcatcctccctcttaacttttaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccagtatctgacttatcctactttgcagacatgcttcatcctccctcttaacttttaa 380

                                                                       
Query: 181 ttcttttacctgtgtgttctcggaattccaccattgccttcattgttttagaatctgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttttacctgtgtgttctcggaattccaccattgccttcattgttttagaatctgcta 440

                                                         
Query: 241 atgccatcaaccagaacagttttgttctaccacagccttcatggag 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgccatcaaccagaacagttttgttctaccacagccttcatggag 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)