BAC Information

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BAC

Clone NameMSMg01-068B23
Chromosome14 (Build37)
Map Location 69,658,776 - 69,658,968
singlet/doubletsinglet
Overlap geneStc1
Upstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
Downstream geneEG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068B23.T7 (MSMg01no068_b23.b1)MSMg01-068B23.TJ (MSMg01no068_b23.g1)
ACCAG292691AG292692
length747747
length of high quality
(start - end)
---195 (74 - 268)
definitionCHROMAT_FILE: MSMg01no068_b23.b1 PHD_FILE: MSMg01no068_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:27 2005CHROMAT_FILE: MSMg01no068_b23.g1 PHD_FILE: MSMg01no068_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCTAAACGACTCCTATAGGTTTCGCACCGCGGAATTCACTAAATTTA
GTTTTCCGAATAAACAAACAAACAAAAAAACCTTCTTAACCAGCATGTGT
TAGAACTGATTTTACCCCACACACTACCCTATATGCCTTGTCTGTAACTC
ATCCTGTGAATACTCCTGAAGTATGTTGGTTCATGATCACACACAATCAT
GATATATTCATGACTAACACTTAGCACTATACTGGTGTTACCTACTATGC
TTGTATTCCAACCAGACTCCAGTTTTGACAGCTATGCCTAACTCTACACT
AACAATCTCAAACATTTTTTTGTTGGTCTTGCTTGTTCGACGATCCTAGT
TCTATTTTCTTTTTATATCCGCCCCCTCCTCTCTGTCTATTCATCAATTT
ATACATCTATCCATCCATCCATTCATCTAAATAAAAAATCTATCTCTTCC
TCCTTCTATACCTTCATTTATCCACCTGCTTATTCTCTTGCTTACTTTCG
AACTTATAGATTATCCATTACTTATACAACATTATTCCCTGTACACTTTT
TTTTTTTTATTATTAGTAAGTTCGGTCTCTCTTTACTTTCATAATTTTCA
CTCTTACTACCCTTCATTCCCATCTTATTTTCGCCTCGTCCTTCCTCTTC
CTTTTTTCTCCATTTCTCCTTTTCTCCTCCTCTTTTATTTCTTCTTCTTT
CATGCTATATTCCTTTCCCCTCCTACTTCCTGATGTCTCACGCTCAT
TACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCGTTGCATTCCAAGAACAATTCTCCTAAGTTCAGTAAACTTTC
TTTCTCTCTTTTCTCTTTTTTCCCCTATTTTTTTTATTTTTGCTGTGACC
TTTTCAATCTGTGATATACCCTCCTTTCTCCCCACAGTGACATTGGTATA
TGTACCAACAATGCACATATCTACACATATGAAAAGAAGCAGTTCTCACA
ACGTTGCTGGGTTTTTGTTTTGTTTTGTTTTTTTGGTTTTTGGTTTTTGT
TTTTTGGTTTTTGGATTTTGCTTTTTTTTTCCCCCTCCCCCTGCCCCTCT
CCACCTCCTTCTTTATTTTCCCCACCCTCCCCCCGCGTTCTCTGCATAGC
GATTCTTGTTCTGACCCATACCTGTTTGCATGATCTCCTCTCTTGCGATT
TGGTTGTCCCCTTAAAACATTTTCGCTGCTCTACTAATTGCTTTATGTAT
TTACTAATTTACACGATATCTATGTTTTTTGCTCGAGTACTGGAATAAAC
AGTGCACATACCCCGGCATATGTCACTTATTTACTGCTTAATTATATTTT
TTAACTCCCCTGGTCATATATCAACTCATCAAACATATCCTTGTTCAAGA
CACTATGTCACTCTACTCTACTTCGCTTTATCTCATCAATCCAATTACGT
CAAATCCCTTATCTTTACACCTTTTCTCCTCACTTTCTTTCTACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_b23.g1 MSMg01no068_b23.g1 CHROMAT_FILE:
MSMg01no068_b23.g1 PHD_FILE: MSMg01no068_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:27 2005
         (195 letters)



>mm_chr14_69658576_69659168
          Length = 593

 Score =  342 bits (177), Expect = 6e-99
 Identities = 190/197 (96%), Gaps = 6/197 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattctcctaagttcagtaaactttctttctctcttttctcttttttcccct--atttt 58
           |||||||| |||||||||||||||||||||||||||||||||||||||    |  |||||
Sbjct: 201 caattctcttaagttcagtaaactttctttctctcttttctctttttt----tttatttt 256

                                                                       
Query: 59  ttttatttttgctgtgaccttttcaatctgtgatataccctcctttctccccacagtgac 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttttatttttgctgtgaccttttcaatctgtgatataccctcctttctccccacagtgac 316

                                                                       
Query: 119 attggtatatgtaccaacaatgcacatatctacacatatgaaaagaagcagttctcacaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attggtatatgtaccaacaatgcacatatctacacatatgaaaagaagcagttctcacaa 376

                            
Query: 179 cgttgctgggtttttgt 195
           |||||||||||||||||
Sbjct: 377 cgttgctgggtttttgt 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 593
Length adjustment: 8
Effective length of query: 187
Effective length of database: 585
Effective search space:   109395
Effective search space used:   109395
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)