BAC Information

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BAC

Clone NameMSMg01-068L06
Chromosome14 (Build37)
Map Location 106,776,655 - 106,776,847
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476
Downstream geneLOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068L06.T7 (MSMg01no068_l06.b1)MSMg01-068L06.TJ (MSMg01no068_l06.g1)
ACCAG293135AG293136
length718708
length of high quality
(start - end)
323 (49 - 371)193 (127 - 319)
definitionCHROMAT_FILE: MSMg01no068_l06.b1 PHD_FILE: MSMg01no068_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:13 2005CHROMAT_FILE: MSMg01no068_l06.g1 PHD_FILE: MSMg01no068_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTAGATCTGTACCTTATTTTTAATGGTTTTGTTTCTTTGGT
TTCTTGCATCTAGTTTTTACGTTCTTTATCTATATTTGGATATTCATCCT
CTATCCGACGTGTAGTTAGTAAAAATCTTTCTCATTCTGTAGGCTGCTAC
TTTGTGTGGATGGAGGTGTTTTTTGCCACTGAGGAGCTTTTCAGTTTTAT
AACATCGCATTCACTTATTGTTGGTCTTAGTGTCTATGCTATCCGCATTT
TGGTCAAAATGTCTTTTCCTGAGCCCAAGATAAAGTCTCCATTTTCTCCA
TTTTTTTCCTTCTATCATATTGTTTGTGCCCCGCCCCTATATTGAGTTCT
TTGATCCTTTTGGGGCTGAACTTAGCGCAGGGAGATAAGAACGTATCTAT
TTGTATTCTTTCACACATAGCACTTGTGGCTTGACAAGCACCATTTGCTG
AAGATTCTGTCTTTGATTTTTTCTTTTCAGTGTGTATTCCTGTCTTCTTT
ATCAACTGTTTTATCTTCTTAGGTGCTTAGATTTACGTCTGCGTCTTGAT
ATTTTCTTCCTAGCGCCTTTGTTAGATTCGGATTGGTGGGCATTAACTCA
CTATTCATTCTAATCATGATACTATGTATTGGCTGCCATTGGATATTCTT
TGCTGCTTATTAATTTTG
NAATCATGAAGTGGTAGGCTGGCGGCGCCTGGCCTTTCTTATTGGTGAAC
TATAGAAGGATCTGCCTAATAACCTGATCCTTTGAGCACTCTCCCTGGTC
TTTCGCTGCCTGCCCATTCTTCCCTGATGCTTTTCATTAGTGTTCTTCAC
TAGTGCACTAGTGTCTGCACACTCAGAGCCAACGCAGAATACTGCAAAAG
CTCTCTTCATTCATTTCTTAAAATTCAAAATATAATTACATCACTTCCCA
GCTTCTTTTTTCTTCCTTCAACCCTTTTTTATTGTCCATGTTATTGTGTG
ACAAAACTTCTCCTAAGGATTTACTACTTATATTTACTCACCCCAGATAT
GGAGCCCAGATTTTTTTTCTCCCCCACCCCGCCACCAAATTCCAACTTGG
TGAACCTATGAGTTTTAGTGCGGTTAAATTAAAAAGAATGTGCATGAGGG
GATATTTAGAGAAGTAGAAAAGATTCAAAGACCACTATTGCTGTATTACC
AAGTTGCACCTTCACATATGTTCTGCACACAAAATTCGGTATCCTGTAGC
TCATAGCATAGTCTGTCAGCAAATCATCAAATTGTAGAGCGTCCCTTTCT
TATGACCAGGGATGCATTTTTTTTATTTCCCTTCCTCATATATGTGGTCT
GTTTCTGCTATTTTTTTCTATTTGTCTGTGTTTAAAACCACTTTGCTGGT
TACCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_l06.g1 MSMg01no068_l06.g1 CHROMAT_FILE:
MSMg01no068_l06.g1 PHD_FILE: MSMg01no068_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:13 2005
         (193 letters)



>mm_chr14_106776455_106777047
          Length = 593

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcttttcattagtgttcttcactagtgcactagtgtctgcacactcagagccaacgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atgcttttcattagtgttcttcactagtgcactagtgtctgcacactcagagccaacgca 334

                                                                       
Query: 61  gaatactgcaaaagctctcttcattcatttcttaaaattcaaaatataattacatcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaatactgcaaaagctctcttcattcatttcttaaaattcaaaatataattacatcactt 274

                                                                       
Query: 121 cccagcttcttttttcttccttcaacccttttttattgtccatgttattgtgtgacaaaa 180
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cccagcttccattttcttccttcaacccttttttattgtccatgttattgtgtgacaaaa 214

                        
Query: 181 cttctcctaagga 193
           |||||||||||||
Sbjct: 213 cttctcctaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)