BAC Information

Click to search

BAC

Clone NameMSMg01-068P16
Chromosome14 (Build37)
Map Location 29,957,305 - 29,957,596
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1
Downstream genePpia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P16.T7 (MSMg01no068_p16.b1)MSMg01-068P16.TJ (MSMg01no068_p16.g1)
ACCAG293347AG293348
length809718
length of high quality
(start - end)
84 (73 - 156)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no068_p16.b1 PHD_FILE: MSMg01no068_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:35 2005CHROMAT_FILE: MSMg01no068_p16.g1 PHD_FILE: MSMg01no068_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCTATATTTGCGCCGCTATACGACTCCTATAGTTCCAGGATCCGCGG
AATTCAAACCAGAAAATTCCCATTGTAATCTACTTCAGACCTTCTGAACC
ATTCATCAGGCCTTGAAATGAACCTCCCCTGGTCTCTGCGGGGAGCAGAG
GGGGAATAGGAGGGAGGAGGGAGGGTGCTATNTTAATTTTTTTTTTTTTT
TCTTTTTTTTATTCTCTTCTTCTCTCCCCTCCCTTTCCTCTCTCTTTCCC
CTCTCTCTCCTTTTTTTTTTCTCCTTTCCCTTCTCTCCCCTCTCCTCTCT
CCTTCCCTCTCTTCTTCCTCCTTCCTTCTTCTTTCTTTTTTTTCTCTCTT
TCTTTTCCCTCTCTCCTCCCCCTTCCTTTTTTGAGGTAACTTCCCCAGAA
CTAATCCCCCTGTTTGTTTTTTTTTTTGTTTTTTTATTTCCTCCCCCCCC
CTTCTCCAAACCTACCACATATCTCTTTTCTTTCTCCCTCTTTTTCTCTC
CCTCCTCTTTTCTTCCTCTCTTCCTCCACCCCTTTCTTCTCTCTTCTCCT
CTTCTCTTCCCTTCTCTTTTCTCCTCCTCTTTTTTCCTTTCCTCCTCCTC
CCCCCCCTCTCTTTCTCTTCTCTTTCCTCTTTTCCCCCTCCCTTCCTCTC
TCTTCCTCTTTTTTCTCCTTTTTTTCCCCTCCTCTCTCCTCCTTTTCTCC
CCTTCTTTCTCCTCTCTTTCCCTCTCCCTCTTTCCTTCCCCTCCTCCTCT
TCCTTCTCCCTTCTCTCTCCTCCCTCTCCTTCTCCTCTCTTCTCTTCCCT
CTCCCTCTC
AACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATTGGCAAATAATGTCCTTTTA
ATTAAATACACCAACAGTTTTCTCATTCCACTGAGCATAAACTGTTTGCA
GAAAAGATTTTATTTAAATTACCCAGAGCGATTACTTTAAATGCACAGTT
TGGTTAAAAGCTACAGTCATAAATAATTAATTTTTCATTTTTTTAAAGAA
TTATGCAAATTTAAACCATGGAGCTAAAAGTGGAAAGCAGCTAATCACAA
GTGAGCCAGGCTTCCACTTCTCTTCCTGGCTCCTCTGGCTCCTTATGGCT
GTCTCTGCTGGGCTCTGATTGTTTGGCTCCTCTCTCCCCACTGAGCATGC
TCTGATCTAGGCATCTAGATCTAATCACTCAAGTACAACCTGTGAGCTGA
ATAACTATGTAACTGAGCTGGGTGAACGAGGTAACTCCTACCCACTGTTA
GTCTCCAGACAATGCAGTGTGCATGTAGTTAGTAAACTCTTGCCAATGAA
GGAGATACCAAATTGATTGATTGTGACCTATACCCAAAGTATCTGTCATG
TGCAGGAATTCTATTGAATGGTAGCCCTTGTAGAAATAACCTTTTTTTTC
CCTAGGAATTACTCATAATCTATTCACAAAAGAAGTACAATGGAAATACC
AATATAGATTATGCAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p16.g1 MSMg01no068_p16.g1 CHROMAT_FILE:
MSMg01no068_p16.g1 PHD_FILE: MSMg01no068_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:35 2005
         (293 letters)



>mm_chr14_29957105_29957797
          Length = 693

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattggcaaataatgtccttttaattaaatacaccaacagttttctcattccactgagc 60
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct: 201 aaattggcaaataatgttcttttaattaaatacaccaacagttttctcattctaatgagc 260

                                                                       
Query: 61  ataaactgtttgcagaaaagattttatttaaattacccagagcgattactttaaatgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaactgtttgcagaaaagattttatttaaattacccagagcgattactttaaatgcac 320

                                                                       
Query: 121 agtttggttaaaagctacagtcataaataattaatttttcatttttttaaagaattatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtttggttaaaagctacagtcataaataattaatttttcatttttttaaagaattatgc 380

                                                                       
Query: 181 aaatttaaaccatggagctaaaagtggaaagcagctaatcacaagtgagccaggcttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatttaaaccatggagctaaaagtggaaagcagctaatcacaagtgagccaggcttcca 440

                                                               
Query: 241 cttctcttcctggctcctctggctccttatggctgtctctgctgggctctga 292
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 cttctcttcctggctcctctggctcctcatggctgtctctgctgggctctga 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)