BAC Information

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BAC

Clone NameMSMg01-069M22
Chromosome14 (Build37)
Map Location 9,197,469 - 9,197,718
singlet/doubletsinglet
Overlap geneOit1
Upstream geneEG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107
Downstream geneLOC667005, 4930452B06Rik, LOC100041948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M22.T7 (MSMg01no069_m22.b1)MSMg01-069M22.TJ (MSMg01no069_m22.g1)
ACCAG293978AG293979
length730699
length of high quality
(start - end)
251 (71 - 321)104 (55 - 158)
definitionCHROMAT_FILE: MSMg01no069_m22.b1 PHD_FILE: MSMg01no069_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:39 2005CHROMAT_FILE: MSMg01no069_m22.g1 PHD_FILE: MSMg01no069_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAAT
TCCTGCACCTTTCCACAGGATATATCCCTGATGATTCTCTCTGGGCAGCT
AACTAGACCCCAAGGAGGAACACTTTCAACTCATTTACAATGGCAGTTTG
GAAGGATTCACAATATCTGATCACCAATCTCACTGACTGATCCCAGCATG
GACTCTTGTGTGGTCTCAGCACAGTCTCATGTCGTGGACATGATCTGCAC
ACATGACCGAGAGTCCCCCCATCCCCGCTGCCATCATGTTAGAATTTGGT
AAGAACTCACACATGAACTTTCTACATGGCCTCCTGCTGTGATATGACAC
ATGATCTATTTTAATTTCCCTACTTGCAGGTCTGATTCGCGTTGAGGTCT
TCATCTTTACCACAGTCACCATGTGGGTCTTCCTTCGCAGCTACTCAAGC
TTCAGCATGTCAATTATTTCTTCTGCTCCTGCCGTTTGGCCGCTTTGTCG
CTCGTGGCCATAATCCCCTTAGTCATTCACTATTCCGTTCGACCTACCTC
TCCCTTTGACCTGTGCCTTACACCCCTTCTCGATGCCGCATTTTCACGTC
CTTTTGGCTTTTGTGCATATTCCGTATTATAATTCCCGGTATTTCCATTT
ATCCCTTTGTTCCAGTCATAATAGTTATTCTTAACAACCTTTATCTTAAC
TTATTTTTTCCACCTTTTCGAATTTTACTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGGTTGTCAGGTTTGCACACCCATCTCATTGTTCCCTTGTAAAAGTA
CACATCTAGGTATTTGTGTATGTGTGCACTGTATATACGTATGTTACATG
TGTGTGTGTGTATGCACACATGTGGGTGTGAATGTTTGCACTTGTGAATG
CCCATGCAGACACCAAAAGATGTCATTAACTGTCCCCTCCATCACTCTCT
GCCTATTCCTTTGATACAAGTCTCTCCCAGAAACCAAGCCTTCAATCTTC
TCTTTTTTACAAGTACTCATCCAGATCCCCGAACCATCTTATTTAATGGT
TTCCCGATACAAAACCCTATAATTTATAACAGATAGCCAGTGTCGTTCTC
CCCTTAAAAACTATTTAAAATGTTGGGGTGGGGTGTTCCTCACACCCCGC
CCTTCCCCATTCCTATCCCTATCACCTATCATATTATACCAGATATTAAA
CCTAAACCTTCTCTCTATTCAATAAATCCAAATTTATATCTCATCAAAAC
CCTCCTCCAATTATTTATACCTTTTTCTTTTCCCTTCTCCTTTCTTCCCT
CCTCCCTTCTTTATTTAACTGCATTCCGCCTTTTTTCTATCCCCTTTACC
TTTCTTATACAAATTCTAAAATTCATTCAATATTTATTTTTACCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m22.b1 MSMg01no069_m22.b1 CHROMAT_FILE:
MSMg01no069_m22.b1 PHD_FILE: MSMg01no069_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:39 2005
         (251 letters)



>mm_chr14_9197269_9197918
          Length = 650

 Score =  447 bits (231), Expect = e-130
 Identities = 246/251 (98%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatccctgatgattctctctgggcagctaactagaccccaaggaggaacactttcaac 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatatccctgaggattctctctgggcagctaactagaccccaaggaggaacactttcaac 391

                                                                       
Query: 61  tcatttacaatggcagtttggaaggattcacaatatctgatcaccaatctcactgactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcatttacaatggcagtttggaaggattcacaatatctgatcaccaatctcactgactga 331

                                                                       
Query: 121 tcccagcatggactcttgtgtggtctcagcacagtctcatgtcgtggacatgatctgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 330 tcccagcatggactcttgtgtggtctcagcacagtctcatgtcgtggacatgatctgtac 271

                                                                       
Query: 181 acatgaccgagagtccccccatccccgctgccatcatgttagaatttggtaagaactcac 240
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| 
Sbjct: 270 acatgaccgagagtccccc-acccccgctgccatcatgttagaatttggtaagaactcaa 212

                      
Query: 241 acatgaacttt 251
           |||||||||||
Sbjct: 211 acatgaacttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 650
Length adjustment: 9
Effective length of query: 242
Effective length of database: 641
Effective search space:   155122
Effective search space used:   155122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)