BAC Information

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BAC

Clone NameMSMg01-070G17
Chromosome14 (Build37)
Map Location 68,774,617 - 68,899,778
singlet/doubletdoublet
Overlap genenone
Upstream geneEbf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070G17.T7 (MSMg01no070_g17.b1)MSMg01-070G17.TJ (MSMg01no070_g17.g1)
ACCAG294445AG294446
length662679
length of high quality
(start - end)
590 (35 - 624)502 (78 - 579)
definitionCHROMAT_FILE: MSMg01no070_g17.b1 PHD_FILE: MSMg01no070_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:29 2005CHROMAT_FILE: MSMg01no070_g17.g1 PHD_FILE: MSMg01no070_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,899,193 - 68,899,778)(68,774,617 - 68,775,118)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGCAA
TAACTAACCTATATAGTGGATGATAGAAGCATATAAATTTTGTAATCTTA
TTCACATAACCTAGAACTTGTGAACAGTTTTCAGGATGGAGTATTGTTAT
GTTCCCAGACTGGTAGCTCCTTGGCTTAAATGACTCTCCTGCCTAAGTGG
GTTGAGCTATAGTTGCATAGCATGCCCTGTTAAACTAAGCTACAATTTTA
ACCTCTGGATTAGGATGCTAGAGATGCAGCCCAGGCCGCTTGGGAAGAGC
AAAGTATCACAGACCACTATAATGAAGAAGTCAGAAACATGACAGAATTA
CTTTATATTCTATGTGCAATAAACTCATCTTTCGGTGAAGTGTTACGTTA
ATCCCACCAGCTGAGGGTAAGATCATTATCATGATTCAAAGCCAAATTCG
AAGCAAGCATTACTTAAATACTGGCCAGGTTGACAGACTCACTGGCCAGG
TTCATCTCTGGGTTTCCAGAATATGGCTTTAAGTCACATCTTGCAGGGAC
TTAAAAAGGTAACCCCACAAGGCCAAAGTATTTCCCACCACATCCTATGA
GAAAGGGGCCTATATCCTGACATGGTCCCACCCCACATACCTCCTGCCCA
CATGTGATCAAG
TTACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATTATGTGATTTAAAAATGCCA
TTGCTAATAGAACTGTTCTCTTTAAGACCTTGACAAATTAAGCCAGAATC
TAATGTGGATAGCCTTAGGTCTTATAGACGCTTGACTAATGGGTCTGTGA
TAAAGATACATAATAGTTAAAGGATCCAGGGATGCAGATAGCATCACAAG
GCACGTTTTCTGAGACTGCTGCTCTTCTATCAAGTAATCAACTGTTTCAG
ACCGTTAAATTCACTGGTGGACACTCATCAGCCACAGCCTGTATTTAAGG
TTTCCTCTTCTCTCTATTTTTGAATCCATTTTTCTGGTGATTCTTCATCT
GCATTCCTCCGGAGAAATGCCCAAGACTTTAGAAGATACAAATCAGAGAC
TCACATGTGTAAAACAAAGGCTCCTCTGGGTTTCTAATACCAATATATCC
CATCACTTCTTCTTGGGATCCCACAGTGAAGTGGGTGGCCAAGCCATGTG
CCCTTAGCCTCCTCATCTTCTGCTTGGACACGGCCACAGGCATTGCAGTA
GTGTAATTTTTGTTGTTAACGTGACACATACTGGAGTCACCTGGGACAAG
AGAACCTCATTTGAAGAATTGTCCCAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_g17.b1 MSMg01no070_g17.b1 CHROMAT_FILE:
MSMg01no070_g17.b1 PHD_FILE: MSMg01no070_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:29 2005
         (590 letters)



>mm_chr14_68898989_68899978
          Length = 990

 Score = 1102 bits (570), Expect = 0.0
 Identities = 582/586 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgcaataactaacctatatagtggatgatagaagcatataaattttgtaatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gaattcttgcaataactaacctatatagtggatgatagaagcatataaattttgtaatct 731

                                                                       
Query: 65  tattcacataacctagaacttgtgaacagttttcaggatggagtattgttatgttcccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tattcacataacctagaacttgtgaacagttttcaggatggagtattgttatgttcccag 671

                                                                       
Query: 125 actggtagctccttggcttaaatgactctcctgcctaagtgggttgagctatagttgcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 actggtagctccttggcttaaatgactctcctgcctaagtgggttgagctatagttgcat 611

                                                                       
Query: 185 agcatgccctgttaaactaagctacaattttaacctctggattaggatgctagagatgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 agcatgccctgttaaactaagctacaattttaacctctggattaggatgctagagatgca 551

                                                                       
Query: 245 gcccaggccgcttgggaagagcaaagtatcacagaccactataatgaagaagtcagaaac 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 550 gcccaggccgcttgggaagagcaaagtagcacagaccactataatgaagaagtcagaaac 491

                                                                       
Query: 305 atgacagaattactttatattctatgtgcaataaactcatctttcggtgaagtgttacgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atgacagaattactttatattctatgtgcaataaactcatctttcggtgaagtgttacgt 431

                                                                       
Query: 365 taatcccaccagctgagggtaagatcattatcatgattcaaagccaaattcgaagcaagc 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 taatcccaccagttgagggtaagatcattatcatgattcaaagccaaattcgaagcaagc 371

                                                                       
Query: 425 attacttaaatactggccaggttgacagactcactggccaggttcatctctgggtttcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 attacttaaatactggccaggttgacagactcactggccaggttcatctctgggtttcca 311

                                                                       
Query: 485 gaatatggctttaagtcacatcttgcagggacttaaaaaggtaaccccacaaggccaaag 544
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaaaatggctttaagtcacatcttgcagggacttaaaaaggtaaccccacaaggccaaag 251

                                                         
Query: 545 tatttcccaccacatcctatgagaaaggggcctatatcctgacatg 590
           ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 250 tatttcccaccacatccaatgagaaaggggcctatatcctgacatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no070_g17.g1 MSMg01no070_g17.g1 CHROMAT_FILE:
MSMg01no070_g17.g1 PHD_FILE: MSMg01no070_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:29 2005
         (502 letters)



>mm_chr14_68774417_68775318
          Length = 902

 Score =  948 bits (490), Expect = 0.0
 Identities = 499/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattatgtgatttaaaaatgccattgctaatagaactgttctctttaagaccttgacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattatgtgatttaaaaatgccattgctaatagaactgttctctttaagaccttgacaaa 260

                                                                       
Query: 61  ttaagccagaatctaatgtggatagccttaggtcttatagacgcttgactaatgggtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagccagaatctaatgtggatagccttaggtcttatagacgcttgactaatgggtctg 320

                                                                       
Query: 121 tgataaagatacataatagttaaaggatccagggatgcagatagcatcacaaggcacgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgataaagatacataatagttaaaggatccagggatgcagatagcatcacaaggcacgtt 380

                                                                       
Query: 181 ttctgagactgctgctcttctatcaagtaatcaactgtttcagaccgttaaattcactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgagactgctgctcttctatcaagtaatcaactgtttcagaccgttaaattcactgg 440

                                                                       
Query: 241 tggacactcatcagccacagcctgtatttaaggtttcctcttctctctatttttgaatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggacactcatcagccacagcctgtatttaaggtttcctcttctctctatttttgaatcc 500

                                                                       
Query: 301 atttttctggtgattcttcatctgcattcctccggagaaatgcccaagactttagaagat 360
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 501 atttttctggtgattcttcatctgcattcctccggagaaatgggtaagactttagaagat 560

                                                                       
Query: 361 acaaatcagagactcacatgtgtaaaacaaaggctcctctgggtttctaataccaatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaatcagagactcacatgtgtaaaacaaaggctcctctgggtttctaataccaatata 620

                                                                       
Query: 421 tcccatcacttcttcttgggatcccacagtgaagtgggtggccaagccatgtgcccttag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccatcacttcttcttgggatcccacagtgaagtgggtggccaagccatgtgcccttag 680

                                 
Query: 481 cctcctcatcttctgcttggac 502
           ||||||||||||||||||||||
Sbjct: 681 cctcctcatcttctgcttggac 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)