BAC Information

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BAC

Clone NameMSMg01-070H09
Chromosome14 (Build37)
Map Location 75,936,891 - 75,937,236
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912
Downstream geneSpert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070H09.T7 (MSMg01no070_h09.b1)MSMg01-070H09.TJ (MSMg01no070_h09.g1)
ACCAG294477AG294478
length786815
length of high quality
(start - end)
367 (126 - 492)---
definitionCHROMAT_FILE: MSMg01no070_h09.b1 PHD_FILE: MSMg01no070_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:32 2005CHROMAT_FILE: MSMg01no070_h09.g1 PHD_FILE: MSMg01no070_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCC
CNNNNNCCCCNNNNNTTCACCTTCCGCTTATCTATAAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCTTTGCCCTGTC
CATCAACGGACAAAGTCTTCCAGTGTTAGGGATACCAACAGAATTCAAGA
GTCCCTTTGCCAGCTTTGTGCATGCTGTCATACCTGGGTGTTAAGTGGAT
ACTGGTGACCCAAATGGCCCCATCCCCACTAGAAATATGTTTTTAGTGAT
GTGTATCTAAATGCAATGACAGTGACTCCCTCTGGACCAGATCAGTTTAT
AGTATCAAAGAGAGCCGGCTCCTCAGAGAGATGTTCCCATCCCAGGGTAT
TCATATTTCCTTCAGAAGAGAGGATGGCTTTGCTTGCTCGTATCCGATAT
GAAATCCGAGTTCTAATCTCTGGGAGCTTTTCTTAGTGCTCTCGTCTGCG
CAAAGCAACACCCAGCTCCTGATGCATTATCCTATTACATTGGGCGCCCA
GCTTCCCTGCACCCGAATGATCCCATTGCTGTAAATAATAGACCATTACA
TCTGGGTCCATTTTCTGCTTATTTGCCAGGCGTCTGAGGCAGGTTTATCA
TCCCAGCTGTGGCAATTGCTATTTGCCAGCCGCTGATGATGTGTTCTCTG
TGTGCTGTGTGCCCCATCAACCTTGATGGTTGCTTGAATTTGATTGCCTC
CAAACGCCAGTAGAAATTCTCTGAGGCTTATTACCG
NNNNNNNNNNNNNAAAANNNNNTTTTAANTTTTTTTCAATAGGCCAAAAA
AGGGGNAAAAAATAAAAGGGGGGGGAGGGGGATAAGGGGGTGGCCCCCCC
CTGGGGGGGGGCCGGGGGGGGGCTNNCCCCCGGGGGGCCCCCCCCCATGG
GGTTTTTTTTTTCCCCCTCCCGCCAAAAAAAAAAAAGAAAAGAAAGGAGA
GGGGGGGTGGGNCGCGCTGTGTGTGGGTGTAGGGGGGGTGGGAACACCGC
NTTAAAGTGAGGGTATTTTGTGGCCCCCCCCCGGGAGAGGGGGGGAAAAA
TGTCCCCAAGGGGCGAAGTGAAGGGGGGGGAAGAAGCACGAAGGTATAGA
GTTGGGGGGGGCGTGAAATATGCGGAAAGACAATTTTAAAACAAGAAAAA
AGGGGGGGAGATCCGGGGGGAAAACTGGGGGGGCCCCCTGTGGGAGGGGG
GGGCCGGGGGGGGGGAGGGGGCTTTTTAAAACACCTTTTGGGGGCGCTTC
CCCCAGGCTGAGAGGGGAGGAAGAAACACAAGAGTATTGGGGAGAGGGGG
AAAGAGGGGGAGACATATCTTATATAATGCTCCTCAAATAGTGGCGGGGT
CGCTAGGGGGGGTGGGGGGGGTGAGCAATTCTAATACTCGGCAGGCATAT
GTATGGGGGGGCATAACAAAGAGTATATCTATCTTATGGGGGGGGCACAC
CAGAAAGGAAGGAGGGGGGGGGGTGGGGGAGTGCGGGTGGAAGACAAACC
CGTAGCTGCGGGGGATAGGATCAGATATTAAGCATTAAAGACGAGGTGTG
CATGTGAGGTGGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_h09.b1 MSMg01no070_h09.b1 CHROMAT_FILE:
MSMg01no070_h09.b1 PHD_FILE: MSMg01no070_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:32 2005
         (367 letters)



>mm_chr14_75936671_75937437
          Length = 767

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  ctgtccatcaacggacaaagtcttccagtgttagggataccaacagaattcaagagtccc 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgtccatcaacggacaaagtcttccagtgttagggataccaacagaattcaagagtccc 507

                                                                       
Query: 81  tttgccagctttgtgcatgctgtcatacctgggtgttaagtggatactggtgacccaaat 140
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 506 tttgccagctttgtgcatgctgtcacacctgggtgttaagtggatactggtgacccaaat 447

                                                                       
Query: 141 ggccccatccccactagaaatatgtttttagtgatgtgtatctaaatgcaatgacagtga 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggccccatccccactagaaatatgtttttagtgatgtgtatctaaatgcaatgacagtga 387

                                                                       
Query: 201 ctccctctggaccagatcagtttatagtatcaaagagagccggctcctcagagagatgtt 260
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 386 ctccctctggaccaaatcagtttatagtagcaaagagagccggctcctcagagagatgtt 327

                                                                       
Query: 261 cccatcccagggtattcatatttccttcagaagagaggatggctttgcttgctcgtatcc 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cccatcccagggtattcatatttccttcagaagagaggatggctttgcttgctcgtatcc 267

                                                         
Query: 321 gatatgaaatccgagttctaatctctgggagcttttcttagtgctc 366
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gatatgaaatccgagttctaatctctgggagcttttcttagtgctc 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)