Query= MSMg01no070_j06.b1 MSMg01no070_j06.b1 CHROMAT_FILE:
MSMg01no070_j06.b1 PHD_FILE: MSMg01no070_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:42 2005
(560 letters)
>mm_chr14_118301938_118302898
Length = 961
Score = 992 bits (513), Expect = 0.0
Identities = 546/557 (98%), Gaps = 1/557 (0%)
Strand = Plus / Minus
Query: 5 gaattcactggacatcaacccagaagtaaggagaagcctgggatcttgcgctagtttctc 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 761 gaattcactggacatcaacccagaagtaaggagaagcctgggatcttgtgctagtttctc 702
Query: 65 tgtcttttgtcctcgggccactagcctgagtattgtgcttctgttctagtatttgaaaag 124
||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct: 701 tgtcttttgtcctcgggccactagcctgaatattgtgcttatgtcctagtatttgaaaag 642
Query: 125 gagagaggtc-aaacggggcaacataaaaatagctgcaagattcctcttcttgttgtcag 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 641 gagagaggtcaaaacggggcaacataaaaatagctgcaagattcctcttcttgctgtcag 582
Query: 184 tcctgtagtcaaatctgctcccggagcactgatcattgtgtagggaaatgaccgtcgcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tcctgtagtcaaatctgctcccggagcactgatcattgtgtagggaaatgaccgtcgcag 522
Query: 244 acatgtccctggtattcaccttcaagtgattcttttaaagagcaatttcagatgtatctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acatgtccctggtattcaccttcaagtgattcttttaaagagcaatttcagatgtatctc 462
Query: 304 accttcatattcatttctgtcacctaatttgggttttcatgtcctctgctggctcgtctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 accttcatattcatttctgtcacctaatttgggttttcatgtcctctgctggctcgtctt 402
Query: 364 cccagcccggcttgattgtgttttaaaagcctttctgcagcagtcctgggcagtgatgtg 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cccagcccggcttgatcgtgttttaaaagcctttctgcagcagtcctgggcagtgatgtg 342
Query: 424 aggccacaggcaggcacttcaccctcagaagcgtgtccctcgttcctccgagtaccattg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aggccacaggcaggcacttcaccctcagaagcgtgtccctcgttcctccgagtaccattg 282
Query: 484 ttcctcgaggttattttcatccgcctcttagctgcatccttcctgaaagcattcacagga 543
||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 281 ttcctcgaggtcattttcatccacctcttagctgcatccttcctgaaggcattcacagga 222
Query: 544 cttgcatctctcaccag 560
||||| |||||||||||
Sbjct: 221 cttgcgtctctcaccag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space: 523050
Effective search space used: 523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_j06.g1 MSMg01no070_j06.g1 CHROMAT_FILE:
MSMg01no070_j06.g1 PHD_FILE: MSMg01no070_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:42 2005
(512 letters)
>mm_chr14_118149349_118150262
Length = 914
Score = 948 bits (490), Expect = 0.0
Identities = 508/514 (98%), Gaps = 2/514 (0%)
Strand = Plus / Plus
Query: 1 aggagtttcgattaaatttttcttttactgtatctattattccccc-tttttttcttcta 59
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aggagtttcgattaaatttttcttttactgtatctattattcccccttttttttcttcta 260
Query: 60 catttgtagtaaggacttgaagctgtggttttagtctgctcagagaatattgcacttttc 119
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 261 catttgtagtaaggacttgaagctgtggttttagtctgttcagaaaatattgcacttttc 320
Query: 120 tttatgtgagaccacagccatgaatgataaagtgaacagaggggacaaaggtcaaagtca 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatgtgagaacacagccatgaatgataaagtgaacagaggggacaaaggtcaaagtca 380
Query: 180 ctcagcaagctattcctttcagctctggttttgtttcagagcagaaataatccatcgtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagcaagctattcctttcagctctggttttgtttcagagcagaaataatccatcgtga 440
Query: 240 agaatatttctgagaaggatttcacaacctttcctttgatttgccaatctaaaattagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatatttctgagaaggatttcacaacctttcctttgatttgccaatctaaaattagtt 500
Query: 300 tcagggaaccagaatcatgaaagtatttttctcacatattcatgacttaacccaataaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagggaaccagaatcatgaaagtatttttctcacatattcatgacttaacccaataaaa 560
Query: 360 cttagtgctcatgggaagtgttctttttttt-gtgcttgccttttacgggatgttaagat 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 cttagtgctcatgggaagtgttctttttttttgtgcttgccttttacgggatgttaagat 620
Query: 419 tttataatatgtaactcatcagtcacacaaagctaagcagaatggcctgaagacacggct 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 tttataatatgtaactcatcagtcacacaaagctaagcggaatggcctgaagacacggct 680
Query: 479 cagctgttaagcacccaaactgctcctgtggaga 512
||||||||||||||||||||||||||||||||||
Sbjct: 681 cagctgttaagcacccaaactgctcctgtggaga 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 914
Length adjustment: 10
Effective length of query: 502
Effective length of database: 904
Effective search space: 453808
Effective search space used: 453808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
