BAC Information

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BAC

Clone NameMSMg01-071I19
Chromosome14 (Build37)
Map Location 88,122,877 - 88,122,995
singlet/doubletsinglet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071I19.T7 (MSMg01no071_i19.b1)MSMg01-071I19.TJ (MSMg01no071_i19.g1)
ACCAG295306AG295307
length710709
length of high quality
(start - end)
77 (130 - 206)119 (70 - 188)
definitionCHROMAT_FILE: MSMg01no071_i19.b1 PHD_FILE: MSMg01no071_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:59 2005CHROMAT_FILE: MSMg01no071_i19.g1 PHD_FILE: MSMg01no071_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAAACGCGG
AATTCTGATGCCTTTCCCCTTACAGAACATAGAAACTAACCACCCTCCAT
ATCAAAATCTAAGAACCCCACCCAATGTTAACACAGGAAATCCAGACAGC
AAAACAGTCACCTTTCATGCTTTTTCACAAAGGTTGGGAAGCTATGCTTG
CTTAATCCACAACGTCGTGTGTTCATTCAACTAAAAACCCAACCAATGAA
AAAGTTACAGTATTCAAACAATGACTCACGAGCAGAAATAATCAAGCAGA
ACAAAAGAACCGATGACCTGTAATACAGAACAGATCAACTTATCTATACT
ACGGAACAAAAAGAATGAAATAATATAAAAGAATCCTTTGGTATTTATGA
CAGAATCTCATGAGATAATATTTTCCTATAACATGAATCCATTTGAGTTA
CAATGAAAGAGAAAAGTGAAAGACTTTTTATTAACTAATGTTTGATCTAT
TAATCGAGAGATATAATCTAACATCTACGTTACAGGAGCACATTTATTCT
TGTCAAAATCCCTCCATAGAACTCTTGAATTAACTTATTATGATATATGT
ACAACCCATAAATTCGACCGCATTTATAACCTATAAAAGCCTTAATGTGT
TGTTTTTTCGATCTTTATAAAAGTTTTAGCATACCTTTATTCATGTTTTT
AGTAAATAAG
CATGCATGGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATAACACTGTCATTTCCCTCAATTTCTACT
TTTATAACTACGACTGGCTTCCGATGGATGGTCTGTAGTGGCTATTTGAC
CCAGGGGCCAAGCCCTTTAGTAGCTTATGTAGGTAGTAAAAGCACTGGAT
ATGTATTGATGCTGAAACTCCAGCACATCAGGTTTCTCCAAATCCAGGGG
GTTTCCTGCCAGACAGTATTTGAGAACTCATTTATGTGTTTGGTGCTAAT
ATATTAATGAGATTTATGTTAATCCCCAGAACATTGATCTAAACACTCCA
TATGAATACAGTTTTCATGACAGTAATTAAAAGTAGATGTCATCTGGTAT
ATTATACCACTATATGTTAGAAAATTGTTTTATTAAAAATTTATTCATGA
GTAAAATAATAAGCATATTATATTTCATTAATTCATCTTAGGATTTATTT
AGTGTTGTTTAGGATCTTTTTGACCGTGTTGCGTTGACAAATATATAATC
GCACATTGCATATACACGTTTGTATTTTTTAGCTCCTCGTAAATATTTTA
ACATTACTGTCTTTGTGGTGCCCTATATAATTCTCTAGTAATAATCGCCG
ACCCAGGAACTTCGTGGCTCTCAACGGTGCACTATTGTATATCGGACAAG
ATTTAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_i19.g1 MSMg01no071_i19.g1 CHROMAT_FILE:
MSMg01no071_i19.g1 PHD_FILE: MSMg01no071_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:00 2005
         (119 letters)



>mm_chr14_88122677_88123195
          Length = 519

 Score =  223 bits (115), Expect = 4e-63
 Identities = 118/119 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataacactgtcatttccctcaatttctacttttataactacgactggcttccgatggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataacactgtcatttccctcaatttctacttttataactacgactggcttccgatggat 260

                                                                      
Query: 61  ggtctgtagtggctatttgacccaggggccaagccctttagtagcttatgtaggtagta 119
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ggtctgtagtggctatttgacccaggggccaagccctttagtagcttaggtaggtagta 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)