BAC Information

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BAC

Clone NameMSMg01-072H11
Chromosome14 (Build37)
Map Location 112,629,067 - 112,629,249
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072H11.T7 (MSMg01no072_h11.b1)MSMg01-072H11.TJ (MSMg01no072_h11.g1)
ACCAG296003AG296004
length686695
length of high quality
(start - end)
---183 (381 - 563)
definitionCHROMAT_FILE: MSMg01no072_h11.b1 PHD_FILE: MSMg01no072_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:13 2005CHROMAT_FILE: MSMg01no072_h11.g1 PHD_FILE: MSMg01no072_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCTGCTGCACCCAGAGTCTCGCTATCTCCCTTCATATTACGAT
ATAGAGGGCTCACAGATTACTCCCGGGATTAGTTGCTAACCACTCTGCTC
AGAGGAGTATAATGATATCAGACCAACCTCTGACTCTTAAAGAAAATCTC
AAATAACAATCTTTTTGATTACCGTCACTTTCGGTATGCCGACCCTTTCG
AGCATCATGACACTGATTAAGACATACTACAATTCTACAGGACCCTGCTT
ATCTTTTCTTTTTTTCCAGATGGTCAATCTGAATCTCTATGATTTCATAA
ATTGTAGGGTCCATTTCTAGCACTCTATCAACACAGATGATATATAACAG
TATGATAAAACCTGTTTAATCTGGGTATTAAAATATTCTGAATTATTCAC
TCTCTACTCCCTATATCTTTGGCGAAAACATATACTGAGCCTCTAATTTC
AATATTTCTAGATGTTGCCTGGAGTTATACATTTGATGCTCTTTTATTCA
AGTAGGTTGAGATTCTCTCCTCTTTTTTTCACTATCATTGTCCTAAACAG
TCATATAGCCTTTGCTACCTTCTATACTATGAAAGACATCTTACTGACTT
TTAGATTGGCTCTATTAAAAATAATGTTGCTATAGN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGCTGGTATTTGCGTGTA
CCAAAGATTATAAGACCTGACGACATTCTTCTGGCAGACTGCATGTTTTA
TAAATAGCTGTCTTAACAAGATCTGAACTTACGATAATGCCAACACATAT
GCTAATGGAGAAGGAGAAAATTTCATGATATCACATGCCTAACCAAAGAA
TTACAGTGTTCTAATGACATGTTGAAAGAATTACCTGCCCTCTTGACATG
ACTGTCTAAATGGGCTATGTGTGAAAGCTATATACATCACCCTGAATGAC
TCAAGGTTTATTTAACTATTCCTACAACACATTGAACATGTATGTACACA
CAGGAAGTAGTCATTACTTTGTTGAAAAGAAATGGGTGGTCATGTGAAGG
ATTGGAGGGAGGGGACAGAGGAATGGTAGGAGGAAAAAATGAAGAGGTGA
ACGATGCAATTGCATTTTAATTATCAAGGACTATTAAGTGTGGTAAGGTG
ATTAAGGATCAAAATGAAGGTTACTGCTTTGCATTGAAAAGATAGGAAAG
GTACCATCAAGGCAAATGTCTAACCCGTTTCAACACTACTTTGATAGGAA
AAAGCTGAAAGGGATTTCTGCTTCTAGAAAGAACTCCCCAGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_h11.g1 MSMg01no072_h11.g1 CHROMAT_FILE:
MSMg01no072_h11.g1 PHD_FILE: MSMg01no072_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:13 2005
         (183 letters)



>mm_chr14_112628867_112629449
          Length = 583

 Score =  331 bits (171), Expect = 2e-95
 Identities = 180/183 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaacatgtatgtacacacaggaagtagtcattactttgttgaaaagaaatgggtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attgaacatgtatgtacacacaggaagtagtcattactttgttgaaaagaaatgggtggt 324

                                                                       
Query: 61  catgtgaaggattggagggaggggacagaggaatggtaggaggaaaaaatgaagaggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catgtgaaggattggagggaggggacagaggaatggtaggaggaaaaaatgaagaggtga 264

                                                                       
Query: 121 acgatgcaattgcattttaattatcaaggactattaagtgtggtaaggtgattaaggatc 180
           |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 263 acgatgcaattgtattttaattatctaggactattaagggtggtaaggtgattaaggatc 204

              
Query: 181 aaa 183
           |||
Sbjct: 203 aaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)