BAC Information

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BAC

Clone NameMSMg01-073A12
Chromosome14 (Build37)
Map Location 106,893,317 - 106,893,607
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742
Downstream geneLOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073A12.T7 (MSMg01no073_a12.b1)MSMg01-073A12.TJ (MSMg01no073_a12.g1)
ACCAG296429AG296430
length706698
length of high quality
(start - end)
288 (73 - 360)353 (60 - 412)
definitionCHROMAT_FILE: MSMg01no073_a12.b1 PHD_FILE: MSMg01no073_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:58 2005CHROMAT_FILE: MSMg01no073_a12.g1 PHD_FILE: MSMg01no073_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGATTAGGATCCG
CGGAATTCATTTCTTCCTGAAGAAGTATAGGTTGTGTGCTTATAATTCTG
ATGCCCAGTGTCTGTGCAACTTCTGGGATGTGATTATAGAAGAAATAGCT
CGGTAGTGTATGGGAACATGAAACAAACGTGATCTCACAGTATGTCAGAA
TCTGGGACTGAAAGGCATGTTCCTTTTAGAGAAGCTAGTGGTTGTCCTTG
ATGCCACACTATCATAAATTACTGTTCCTACTGTTATTTGCATGAGAAAA
GTGATCACTTTGTTTGGATATTTACATTCATGAAGCTTGTGCAGCAAAAG
TCAAATAAACCACAACTAAAGAGAGTTTGTTTTAAATTAATTAATGTATA
AATCTTTACTATGATGCTACTTTTGTGCTACTTCAGCATTCATTTTAATG
TTTTCTTCAACTTTCTTAATGTTTGTTTCTCAAAGTAGGAGTGGTATTTA
TCCATGAGATAATATTTTTTTTACGTGTGTGCTGACAAAATATTTGCCAA
GAAGTAATTCTACCTTACAGTTTGAGGGGTATACATTCTATCATGGTGGG
ACTTCAATTACAAGATTGGCTTGACTCTCATCACATAGTTTGGACTTTTA
AACAGCCTTGAGATTGAGAGACTTTAGAAGGTTCTTCGAATTTGATTTAT
ACGCTA
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGCCCGCGGATTCATTCTTTGGGTGTCTCCCAAATACATAT
GAAGTGTCTTAATAAACTTTATTTTCCATGGTATTATTTTGAGAATATTT
TACTGTTTATTTATGGGTGTGTGAGTAAATCCATGTGTGTACATATTTGT
GAGGGTGTCAGTGGGTGCGGGAATAGGGTGCTGAATCCTCTGGAACTGGA
GTTAAATGCACTTGTAAGCTGCATATCATGGATGTGGGAACCAAATTCAG
GTGCTCTGAAAGAGCTACTAGTGTTGCTAATGACCAAGCTACCTTTCCAG
CCCTTGTTTCCCATTTTAGTCTGTCATGAATAAGGCATCTCTTCCAGCTA
TATAACATTGACGAACTAAATTAAAAAGTCATAAAATATAATTGTTTGAA
ATAAACCATAGATAATAGCAAGATACTGCATATATTTGGCATCCAATATA
CCTTTACACAGACAGAGAGCTAGGTAGATCTCGCCTGAAAATGCCAGTTT
GTATACCTAGTCCTAAAATGAGGGCCAGTATCCCCTTTCTCTCTGATCTG
ATAAAATATGTTACAGGAAATACGATTTGATGATTTATCCATTAGGGACT
TGACTTGACTTTTCAGGTATTATTCTCATAGGCGCTGTTCTCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_a12.b1 MSMg01no073_a12.b1 CHROMAT_FILE:
MSMg01no073_a12.b1 PHD_FILE: MSMg01no073_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:58 2005
         (288 letters)



>mm_chr14_106893117_106893807
          Length = 691

 Score =  522 bits (270), Expect = e-153
 Identities = 285/294 (96%), Gaps = 9/294 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtataggttgtgtgcttataattctgatgcccagtgtctgtgcaacttctgggatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtataggttgtgtgcttataattctgatgcccagtgtctgtgcaacttctgggatgtg 260

                                                                       
Query: 61  attatagaagaaatagctcggtagtgtatgggaacatgaaacaaacgtgatctcacagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatagaagaaatagctcggtagtgtatgggaacatgaaacaaacgtgatctcacagta 320

                                                                       
Query: 121 tgtcagaatctgggactgaaaggcatgttccttttagagaagctagt----ggttgtcct 176
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 321 tgtcagaatctgggactgaaaggcatgttccttttagagaagctagtctgtggttgtcct 380

                                                                       
Query: 177 tgatgccacactatcataaattactgttcctactgttatttgcatgagaaaagtgatcac 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgccacactatcataaattactgttcctactgttatttgcatgagaaaagtgatcac 440

                                                                 
Query: 237 tttgtttggatattta--cattcatgaagcttgtgcagcaaaagtcaaataaac 288
           ||||||||||||   |  ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtttggata---agacattcatgaagcttgtgcagcaaaagtcaaataaac 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 691
Length adjustment: 9
Effective length of query: 279
Effective length of database: 682
Effective search space:   190278
Effective search space used:   190278
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)