BAC Information

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BAC

Clone NameMSMg01-073F16
Chromosome14 (Build37)
Map Location 24,921,087 - 24,921,379
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499
Downstream geneDlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315, LOC100039411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073F16.T7 (MSMg01no073_f16.b1)MSMg01-073F16.TJ (MSMg01no073_f16.g1)
ACCAG296674AG296675
length707820
length of high quality
(start - end)
289 (69 - 357)73 (138 - 210)
definitionCHROMAT_FILE: MSMg01no073_f16.b1 PHD_FILE: MSMg01no073_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:23 2005CHROMAT_FILE: MSMg01no073_f16.g1 PHD_FILE: MSMg01no073_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTCCTTTCCCTAGAATCTTAATTCTGGTTCCCAAGCCACAACAAAAG
AGCCTCTCTCCCCTGGGACACAGTGGGGTCAGTATGTGGCCCTAAAGCAT
CACTTTAGGAATTTATTTGGGGTTATTTTTTTAATTAGTACACACACCAC
ACACACACACATTTCATTATGACATTTTAGCGTATATATATATATATGTG
TGTGTGTACATGTACATGTATATAAATGTAGACAGATTGATTCTTAATCA
CCTACTCCCCATTACCCTCTTCCCTCTGTTTCCCTGGACCCTTTATTCCT
CTCAAATGTTGCCCCATCCGCCTCTACGTCACACACACATATATACATTT
ATATGTGTCAATACACATCATATGCGCATGTGTATCTCTATGTATATACT
TTACTTCACAGAGATTCTGCATATAAGAGAAGACTTTTGTCTTCCTGCGT
CTGGCTTATCTTTCTTACCAAGATGCGGTCCAGTTCTATGCTCTGCCTTG
AAAATGACACAATTGCACTCGCCCTCATGGCTGAATGAAATTTCAGCCTT
TGTGTTTTTACACCTTCCCGTTGTTTTCTGTGAGCCCTTTCACCTTTTTG
TCCCCGCCTTGTTTTTTCCTCTGCCCCTTGTCCTAACCCACAAATTGCCC
CCTATTT
NNCCTCTTTCCCCTTCNNCNCCTCCCTCCTTTTCCCTTTTTTTCCNTTTT
CCTCTNNNCATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCCAGAGCC
CTGGATGGTGTGTGTGCGTGTGTGTGTGTGTGTGCGCACGCACGCGCACG
CTTGCGCATGCATGGGAGGTAAACAGATGGGTCTGGTGAGAGGACTCATT
CCTTTAAGGAGCACTCTTAGATGTAACTGCTTTTCCCAGGTTGGGTGGAT
ACTATTTGACTCATGTTAATACCCCATTGGATTACAAGTTCCACATGACA
GTATCTAACAATCCTCAGTCTCTGCACCCTGTCTGTTTATGCCCTTCTCG
CTCAGAGTACCATCTACTTTTTAATATTTTCTCCCCCCCCCCCCCTNTAC
GTCTAACTCTCCCATCTCCGGTCTGCCTTCTGCCACATAAAAAAAAAATA
CTCCCCTCTCGCTCTCCTTTCCTTGTCGCCCTATACCATACCCTCGCCTC
CCCGATCATTCTATCCCTTCATTCCCATTCCTTCTACCCCTTCCGTTTTT
CCCCTCCCTCAACCATTGTCCCCCTTTTACCCTTCGTCCTTGCTTTTCGT
CGTTTTTCTTTTCCTATTTTACTCCCTCTTTCTTTCTCTTCTTCCTTTAC
CCTCCCCCGTTGCTTTCCTTTTCTTCCCCCTTTTCCTTCGCGCCTTTCTT
TTCCATCCCCTCTCCCCTTTTTCTTGTTTCTCCTCCCACTTTTGTTACCC
TACCTCCTTTCCCTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_f16.b1 MSMg01no073_f16.b1 CHROMAT_FILE:
MSMg01no073_f16.b1 PHD_FILE: MSMg01no073_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:23 2005
         (289 letters)



>mm_chr14_24920887_24921577
          Length = 691

 Score =  513 bits (265), Expect = e-150
 Identities = 285/293 (97%), Gaps = 4/293 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaattctggttcccaagccacaacaaaagagcctctctcccctgggacacagtgggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcttaattctggttcccaagccacaacaaaagagcctctctcccctgggacagagtgggg 260

                                                                       
Query: 61  tcagtatgtggccctaaagcatcactttaggaatttatttggggttatttttttaattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtatgtggccctaaagcatcactttaggaatttatttggggttatttttttaattag 320

                                                                       
Query: 121 tacacacaccacacacacacaca--tttcattatgacattttagcgtatatatatatata 178
           |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||
Sbjct: 321 tacacacaccacacacacacacacatttcattatgacattttagtgtatatatatatata 380

                                                                       
Query: 179 tgtgtgtgtgt--acatgtacatgtatataaatgtagacagattgattcttaatcaccta 236
           |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tgtgtgtgtgtgtacatgtacatgtatataaatgtagacagattgattcttaaacaccta 440

                                                                
Query: 237 ctccccattaccctcttccctctgtttccctggaccctttattcctctcaaat 289
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ctccccattaccctcttccctctgtttccctggtccctttattcctctcaaat 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 691
Length adjustment: 9
Effective length of query: 280
Effective length of database: 682
Effective search space:   190960
Effective search space used:   190960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)