BAC Information

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BAC

Clone NameMSMg01-073J23
Chromosome14 (Build37)
Map Location 24,071,767 - 24,229,035
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073J23.T7 (MSMg01no073_j23.b1)MSMg01-073J23.TJ (MSMg01no073_j23.g1)
ACCAG296874AG296875
length712710
length of high quality
(start - end)
391 (38 - 428)420 (72 - 491)
definitionCHROMAT_FILE: MSMg01no073_j23.b1 PHD_FILE: MSMg01no073_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:44 2005CHROMAT_FILE: MSMg01no073_j23.g1 PHD_FILE: MSMg01no073_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,071,767 - 24,072,138)(24,228,620 - 24,229,035)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATTCATC
CTGTCTTCTTCACCTCAAAGCTTGCAACTCTTTTTGTTTGGTTGGGTTTT
TTGTTTTGTTTTGTTTTGTTTTTAAAATAACTCTAGTGTTGAACACAGTG
ACTGCGGTTTAGGCACTCTAACGTGACACAAGGTGTTTGTTTGTTTGTTT
GTTTGTTTGTTAGCCAGATCTTTACAATAGTAAACATTAGAAGAGTGAGT
TCACTTTTCTGGTTTAACCATTTAGACTCAGCCCCAGAAGCAAGACAAAC
GGCTGTAAGCTACTGCTTATAGATGGCCCAGATCAATGCCTCTCGGAAGG
TATACATTCTCTCATGATACTGAACTGCTTCAGGTCATCTGACAGAAATT
AGTTATGGGCTCTCGTCCAGTAAGAGGAAGGCAAAGTCGTTGATGGTGGT
CGTCGTTTGCTAAATCGAGAAACATTAGGAAATTCTATAGCTGCACACAC
AATTTTTCTTATTTATCTCCTGTTGCTATCATGCGCACATGATTGTTTAG
TCTGACTTTTAAAAAGCTTAACTCATGCATACTCCTACCTTCCATCATGA
TTGTCAATTTTTATCCTTTTGCCTTTTGCTTTCTCTTTCTCTTCTCCCCG
CTTGTTTTATATCCTTTATTTTTATTCCCTCCGCTTTTACTCTTTGTTAC
GCCTTGCTTGAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTACTTGAGATTTTTGGAGTTTTCTTTAG
GGGAGGGGCATTTACTTAGTTTGGCAAGAATTGGAGACCTACCTGGCTGT
GCTCCATCTATTTCCTTTTCTTACCCAGTATTTCTTTCTCCATACACCAT
TCTTCCCAATTGAATAAACCTTGAGCGTGTTGAAGGTGACAGAGGTGGTC
AGCTCAAGGGCTGTTGTGATAGTATTGGCTTAGGCAGAGCATTGGACAAA
TGAGGCCACCAGCTGGGACACATGACCAGCCCCTAAGGGTCCTGGCTTCA
ACAGCGTGTGGTAGCTTCAGTTCCAGATCATGGAAATTATTTTTGAACAT
CTCTTAGTATGGCAGGGACGCTTTCCCCCTCCCATCTCTCTCAGGGAGAC
AGTGTGTCTCCTTCCATCTACAGAATCTACAGAGGGGGGAAATAACAAGT
AATTCACTGCCTGCTCACTAATACCCACTGCAGTTTTCAACTGCTTACCC
TACTCCAGGGGAAACATGAAACACATTTCCTGTGAGGCATACACACACAC
ACACACACATCCCTACACCTCCTGATAGACACACACAGATACAGAGCGAC
ATAGACAGTGAGAGAGAGATGATCTTGTCGCATTTCTAAGGATTGTGCCA
CAGCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_j23.b1 MSMg01no073_j23.b1 CHROMAT_FILE:
MSMg01no073_j23.b1 PHD_FILE: MSMg01no073_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:44 2005
         (391 letters)



>mm_chr14_24071548_24072338
          Length = 791

 Score =  592 bits (306), Expect = e-173
 Identities = 361/390 (92%), Gaps = 21/390 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaatt-catcctgtcttc-ttcacctcaaagcttgcaactctttttgtttggttgggttt 62
           ||||| || ||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 220 gaattccaccctgtcttcattcacctcaaagcttacaactctttttgtttggtt-ggttt 278

                                                                       
Query: 63  tt-tgttttgttttgttttgtttttaaaataactctagtgttgaacacagtgactgcggt 121
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttgtgttttgttttgttttgtttttaaaataactctagtgttgaacacagtgactgcggt 338

                                                                       
Query: 122 ttaggcactctaacgtgacacaaggtgtttgtttgtttgtttgtttgtttgttagccaga 181
           ||||||||||||||||||||||||||||||||||                 |||||||||
Sbjct: 339 ttaggcactctaacgtgacacaaggtgtttgttt-----------------ttagccaga 381

                                                                       
Query: 182 tctttacaatagtaaacattagaagagtgagttcacttttctggtttaaccatttagact 241
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctttacaatagtaaacgttagaagagtgagttcacttttctggtttaaccatttagact 441

                                                                       
Query: 242 cagccccagaagcaagacaaacggctgtaagctactgcttatagatggcccagatcaatg 301
           |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 442 cagccccagaagcaaggcaaatggctgtaagctactgcttagagatggcccagatcaatg 501

                                                                       
Query: 302 cctctcggaaggtatacattctctcatgatactgaactgcttcaggtcatctgacagaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctctcggaaggtatacattctctcatgatactgaactgcttcaggtcatctgacagaaa 561

                                         
Query: 362 ttagttatgggctctcgtccagtaagagga 391
           ||||||||||||| | ||||||||||||||
Sbjct: 562 ttagttatgggcttttgtccagtaagagga 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no073_j23.g1 MSMg01no073_j23.g1 CHROMAT_FILE:
MSMg01no073_j23.g1 PHD_FILE: MSMg01no073_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:45 2005
         (420 letters)



>mm_chr14_24228420_24229237
          Length = 818

 Score =  750 bits (388), Expect = 0.0
 Identities = 410/418 (98%), Gaps = 2/418 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacttgagatttttggagttttctttaggggaggggcatttacttagtttggcaagaat 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 616 ctacttgagatttttggagttttctttaggggaggggcatttacatagtttggcaagaat 557

                                                                       
Query: 61  tggagacctacctggctgtgctccatctatttccttttcttacccagtatttctttctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tggagacctacctggctgtgctccatctatttccttttcttacccagtatttctttctcc 497

                                                                       
Query: 121 atacaccattcttcccaattgaataaaccttgagcgtgttgaaggtgacagaggtggtca 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atacaccatttttcccaattgaataaaccttgagcgtgttgaaggtgacagaggtggtca 437

                                                                       
Query: 181 gctcaagggctgttgtgatagtattggcttaggcagagcattggacaaatgaggccacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gctcaagggctgttgtgatagtattggcttaggcagagcattggacaaatgaggccacca 377

                                                                       
Query: 241 gctgggacacatgaccagcccctaagggtcctggcttcaacagcgtgtggtagcttcagt 300
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 376 actgggacacatgaccagcccctaagggtcctggcttcaacagtgtgtggtagcttcagt 317

                                                                       
Query: 301 tccagatcatggaaattatttttgaacatctcttagtatggcagggacgctttccccctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 316 tccagatcatggaaattatttttgaacatctcttagtatggcagggatgctttccccctc 257

                                                                     
Query: 361 ccatctctctcagggagacagtgtgtctccttccatctacagaatctacagagggggg 418
           |||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||
Sbjct: 256 ccatctctctcagggagacaatgt--ctccttccatctacagaatctacagagggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 818
Length adjustment: 9
Effective length of query: 411
Effective length of database: 809
Effective search space:   332499
Effective search space used:   332499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)