BAC Information

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BAC

Clone NameMSMg01-074I16
Chromosome14 (Build37)
Map Location 95,001,293 - 95,133,401
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074I16.T7 (MSMg01no074_i16.b1)MSMg01-074I16.TJ (MSMg01no074_i16.g1)
ACCAG297573AG297574
length691732
length of high quality
(start - end)
179 (129 - 307)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no074_i16.b1 PHD_FILE: MSMg01no074_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:56 2005CHROMAT_FILE: MSMg01no074_i16.g1 PHD_FILE: MSMg01no074_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,001,293 - 95,001,467)(95,133,155 - 95,133,401)
sequence
NCACCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGATGTTTCCTATATAACCCTCTTTGAAGGATCTTCTTTGT
GCAGAATAAAGTTGCTATTAGAACCATTCAAATACTGCTAAATTTATTCA
GTTTTGTGGACATAAGTATACTTTTTTAGTAAGGGGTATGTCTATGCATG
TGTGCCTCACTTGTTCAGTAAACTTTCCAAGGCAATTCAGCCAAACAGAA
AGCTCATAAAAAGAGGGATGCTAGCTGTGAATAAAATATTTCACATTTTT
TTCCACTCAAATAAATTAACTGTTTCACTTTTTATACCAGATAAAGCTTA
ATGTCATTGTCAGCTATATCACGATAAAATAACCATTGTTCCCTCTGTTT
TAGTCACCAGAAATAGACACCCCGTAAGTAATCAAGAGACTGTTGATCCC
AATTTATTGATGATAAGCGTGAAATCCATCAGCTCATATATAAGAATGAT
ATACTAACTTTTCAAAAATTCCCAAATCCATCCTGTTTAAGTCCCGCGAT
AATAACTACCTTATTTTATTGGATCTCCTTCGCGTGTGTAATTATCGACT
TCCCACACCCTTTGTTTTTGGCCCTCCTCCCCTCCCTCCCCCCCCCCCTT
TTCTCCTCCTCCCCCTCCCCCTCCCCCTACCTTTTCTCCTC
TCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATACTTTCTTTCTAGAGTTTTGTCT
CACAAAACTTTGGTTTGATACCGATATTTTTTCTTTGGTCTTTTGTATAT
TTGTATTTGTATTCAATCTTTTGTTTTCTGATTCTGTTTTTTAGCTGTTT
GTTTGTGTACATTTCTTCTGCTATTGTGCTCTTTAACTAATTAATTTATT
TATTTTTAAATTCTGGATTGTTTATTTTTTGACTCTTTTTCTACTTGATT
TGTTAAGATTTATTGTTTGTTTGTTTGTTTACAGGAATATAGAAAGATCT
ACCTTCTTTTTTTTTTTCCCCCCCCCCCGTTAATGTAACACATGTATTAA
TTGCTTATTTCTTCCCCCTTAAAACACAAAAATTATTTAGCCTTTGCTTG
AGTCCTCTTTTACCCCTTCTAAACTCTTTATATGTTTTCTAAGCCCACCC
CATATTATCTCTCTATTTATCTCCATCTTTGTTCTTTTAAATTATCTTTT
CTCCTTTATTTTTCTTTTGTCTCATCTTCCTTTTCTTTTAAGATTCTTCC
TTTCTTTTTCTTTCTTTTCAATTTTCTCTCCCCTCCTCCCCTTTTTTCCT
CTTCTCTTTCTTCCCCCCTTTCTTCCCCTCTTTATCTTTTTTTCACTTTC
TTCTCCTTCCTCTCTTTATTTATCTTCTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_i16.b1 MSMg01no074_i16.b1 CHROMAT_FILE:
MSMg01no074_i16.b1 PHD_FILE: MSMg01no074_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:56 2005
         (179 letters)



>mm_chr14_95001093_95001671
          Length = 579

 Score =  323 bits (167), Expect = 4e-93
 Identities = 173/175 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatactgctaaatttattcagttttgtggacataagtatacttttttagtaaggggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatactgctaaatttattcagttttgtggacataagtatacttttttagtaaggggta 260

                                                                       
Query: 61  tgtctatgcatgtgtgcctcacttgttcagtaaactttccaaggcaattcagccaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctatgcatgtgtgcctcacttgttcagtaaactttccaaggcaattcagccaaacag 320

                                                                  
Query: 121 aaagctcataaaaagagggatgctagctgtgaataaaatatttcacatttttttc 175
           ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 aaagcacataaaaagagggatgctagctgtgaataaaatagttcacatttttttc 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no074_i16.g1 MSMg01no074_i16.g1 CHROMAT_FILE:
MSMg01no074_i16.g1 PHD_FILE: MSMg01no074_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:56 2005
         (247 letters)



>mm_chr14_95133039_95133685
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatactttctttctagagttttgtctcacaaaactttggtttgataccgatattttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 363 aatactttctttctagagttttgtctcacaaaactttggtttgatattgatattttttct 304

                                                                       
Query: 61  ttggtcttttgtatatttgtatttgtattcaatcttttgttttctgattctgttttttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttggtcttttgtatatttgtatttgtattcaatcttttgttttctgattctgttttttag 244

                                                                       
Query: 121 ctgtttgtttgtgtacatttcttctgctattgtgctctttaactaattaatttatttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctgtttgtttgtgtacatttcttctgctattgtgctctttaactaattaatttatttatt 184

                                                                       
Query: 181 tttaaattctggattgtttattttttgactctttttctacttgatttgttaagatttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tttaaattctggattgtttattttttgactctttttctacttgatttgttaagatttatt 124

                  
Query: 241 gtttgtt 247
           |||||||
Sbjct: 123 gtttgtt 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)