Query= MSMg01no075_p14.b1 MSMg01no075_p14.b1 CHROMAT_FILE:
MSMg01no075_p14.b1 PHD_FILE: MSMg01no075_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:47 2005
(577 letters)
>mm_chr14_30207119_30208095
Length = 977
Score = 1052 bits (544), Expect = 0.0
Identities = 567/576 (98%), Gaps = 4/576 (0%)
Strand = Plus / Plus
Query: 4 ggaattccacccgatcc--ccaagaacacagaagcaactaagaaggataaaacattgctg 61
|||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattccacccaa--caaccaagaacacagaagcaactaagaaggatcaaacattgctg 261
Query: 62 tgcactcatggggtccaaactggcagaggagaagaaccctgggctagtttccttttccaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgcactcatggggtccaaactggcagaggagaagaaccctgggctagtttccttttccaa 321
Query: 122 aagcaagatttccaccccagggacgtgagaggcagtgaccacgcccagagcatgtgtttt 181
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 322 aagcaagatttccaccccagggacgtgagaggcagtgaccactcccagagcgtgtgtttt 381
Query: 182 gtgtacatgtcgtcagaaactagatctgtgctggagacttctaaacatgatatatatttc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgtacatgtcgtcagaaactagatctgtgctggagacttctaaacatgatatatatttc 441
Query: 242 tgcagtttgaaaagagactttgagaggctggtttgaattagagtagagtcaagaattttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgcagtttgaaaagagactttgagaggctggtttgaattagagtagagtcaagaattttt 501
Query: 302 ttaaagtactcccctctctctcctatgggcagttactccctgcctggctgagacaagata 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttaaagtactcccctctctctcctatgggcagttactccctgcctggctgagacaagata 561
Query: 362 tagcccctggctgaccctggttcacttcccactgcctgacagggtgacagttgaacctga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 562 tagcccctggctgaccctggttcacttcccactgcctgacagggtgacagttgaatctga 621
Query: 422 ataggaaatgacaggcagatcccatgaggactgccaaggatgacttaaatctagttatta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ataggaaatgacaggcagatcccatgaggactgccaaggatgacttaaatctagttatta 681
Query: 482 aactcctatagctcaaactctcagactgttaggattctgtctagcaatcttaatgatgcc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aactcctatagctcaaactctcagactgttaggattctgtctagcaatcttaatgatgcc 741
Query: 542 attgtaaagcctgtgtgaccaatgacaatgtgagtt 577
||||||||||||||||||||||||||||||||||||
Sbjct: 742 attgtaaagcctgtgtgaccaatgacaatgtgagtt 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_p14.g1 MSMg01no075_p14.g1 CHROMAT_FILE:
MSMg01no075_p14.g1 PHD_FILE: MSMg01no075_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:47 2005
(601 letters)
>mm_chr14_30379261_30380261
Length = 1001
Score = 1114 bits (576), Expect = 0.0
Identities = 594/600 (99%)
Strand = Plus / Minus
Query: 1 tttgtttccacaggaagggctaggctttgaaggggcccccttcactgctggttgtctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttgtttccacaggaagggctaggctttgaaggggcccccttcactgctggttgtctttg 649
Query: 61 ttgatggttagtgtttttcatcacagaatagtaaggaaagttgggattctgggttctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttgatggttagtgtttttcatcacagaatagtaaggaaagttgggattctgggttctttt 589
Query: 121 ctctgaatattaaacaggagaaagatacacttcatgggtaagggctttgagtttagctgt 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 588 ctctgaatattaaacaggagaaagatacacttcatgggtaagggttttgagtttagctgt 529
Query: 181 gaacaatgagaacagattcggttccttgggtactgatagtgaaagagagagcgtgctttt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 528 gaacaatgagaacagattcggttccttgggtactgatagtgaaagagagaacgtgctttt 469
Query: 241 ggttcctcttcttggtgactggatttacattgctggccttagtgggtaagaaatgatcac 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggctcctcttcttggtgactggatttacattgctggccttagtgggtaagaaatgatcac 409
Query: 301 ttcagaaagcaagtgtgtgtgagtgatttctctagtgggaacttatcactggtgactaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttcagaaagcaagtgtgtgtgagtgatttctctagtgggaacttatcactggtgactaac 349
Query: 361 tcccttgtaccactttggcggcacaaactgaacatggcaggcttccttttgattttctga 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 348 tcccttgtaccactttggcggcacaaactgaacatggcagttttccttttgattttctga 289
Query: 421 caccagggtgtgtttctatatagttatatctatctattgggagaggaaagggctgctttt 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 caccggggtgtgtttctatatagttatatctatctattgggagaggaaagggctgctttt 229
Query: 481 aaaagagttatttagttttgtttttctcatatatatgtatatatgtatatatagtattct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aaaagagttatttagttttgtttttctcatatatatgtatatatgtatatatagtattct 169
Query: 541 ttcccctcccccacctactccctgatcctttccatctctctacccacccaacttcatatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttcccctcccccacctactccctgatcctttccatctctctacccacccaacttcatatc 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
